PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G048400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 551aa    MW: 62400.3 Da    PI: 6.8905
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G048400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like78.48.6e-25216269155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k+r++Wtp+LHerF+ea++++ G ekA+P++i+e+m+v+g+++++++SHLQkYRl
  Aqcoe7G048400.1.p 216 KTRMVWTPKLHERFMEAINKI-GLEKAVPRKIREVMNVPGVSRTNIASHLQKYRL 269
                        68*******************.********************************8 PP
2Response_reg77.74e-26271291102
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+++ +++l+++l++ +  ev +++ +++al+ l+e++  +Dl+++Di mp m+G++ll+ i++  +++p+i+++++++++++ +al
  Aqcoe7G048400.1.p  27 VLVVDDDEVTLNVLKSLLTSYKH-EVVTVSRPTDALNVLHESRggFDLVITDIHMPIMNGFDLLQIIKKDFKNIPVIMISSENSNDLRSKAL 117
                        89*********************.******************************************************************** PP

                        HTTESEEEESS- CS
       Response_reg  91 kaGakdflsKpf 102
                        ++Ga  +  Kp+
  Aqcoe7G048400.1.p 118 QRGACHYQPKPI 129
                        ******999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23003.9E-3424166No hitNo description
SMARTSM004481.3E-2625137IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521722.99E-3225149IPR011006CheY-like superfamily
PROSITE profilePS5011038.66726142IPR001789Signal transduction response regulator, receiver domain
PfamPF000723.3E-2327132IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.38E-2928129No hitNo description
PROSITE profilePS512949.721213272IPR017930Myb domain
SuperFamilySSF466891.97E-18214273IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-24214273IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-23216269IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MEGHSEEASK SLSGSSTKSD AFVGLQVLVV DDDEVTLNVL KSLLTSYKHE VVTVSRPTDA  60
LNVLHESRGG FDLVITDIHM PIMNGFDLLQ IIKKDFKNIP VIMISSENSN DLRSKALQRG  120
ACHYQPKPIC ESFLQTLWKY VFCKQSVNNH RSIEAEGSVQ EASSHQKLRR ESIEISSSAI  180
NAKNWRQQEH KRKRKPREYD DDYEDEDRDD FPAPKKTRMV WTPKLHERFM EAINKIGLEK  240
AVPRKIREVM NVPGVSRTNI ASHLQKYRLY LKSNKDPNQS RRSFRNSRYY THESRSSGYT  300
PSYNSSMSYK SPQQYAQFPE KQQSQFASFQ PAWGSNFRSH NAVNIPSVGQ ARFYNQGLSN  360
GSYMAQPRCG YSSQMFNNTP ENLQQPFLSS APNYLNQQNG GNQQTFGMGT FMNGDNFSNR  420
EGDPVMHQFF PDAPVEQQNF SNADFQGGSN LQPFETIDFM NLAPADSNLT NNNPSYKSNY  480
VGFQLSNNEG VIELRKTGTD SGETSTVVNP NVNVDQMDDF GNGMMAMEGV ETSPMPNFDT  540
MNFNHVTQVG P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A2e-18216272157Transcription factor LUX
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.12e-51response regulator 1