PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G041000.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MYB | ||||||||
Protein Properties | Length: 682aa MW: 75747.8 Da PI: 6.3815 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 49 | 95 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT++Ed+ l +avk++ g++Wk+Ia++++ gR++ qc +rwqk+l Aqcoe7G041000.1.p 49 KGGWTEQEDDMLTKAVKRYNGKNWKKIAECFP-GRSDVQCLHRWQKVL 95 688*****************************.************986 PP | |||||||
2 | Myb_DNA-binding | 59.3 | 8.6e-19 | 101 | 147 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+++++v ++G + W+ Ia+ ++ gR +kqc++rw+++l Aqcoe7G041000.1.p 101 KGPWSKEEDERILELVDKYGCKKWSVIAQSLP-GRIGKQCRERWHNHL 147 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 51.8 | 1.8e-16 | 155 | 195 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE++ l++a++ +G++ W+ Ia+ ++ gR ++++k++w+ Aqcoe7G041000.1.p 155 AWTKEEELALIQAHQIYGNK-WAEIAKFLP-GRADNSIKNHWN 195 7*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.231 | 44 | 95 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.01E-16 | 47 | 102 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-16 | 48 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 49 | 95 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 51 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.66E-14 | 52 | 95 | No hit | No description |
PROSITE profile | PS51294 | 30.993 | 96 | 151 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 5.24E-32 | 98 | 194 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.5E-16 | 100 | 149 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.4E-18 | 101 | 147 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.98E-15 | 103 | 147 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.3E-26 | 108 | 154 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.615 | 152 | 202 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-16 | 152 | 200 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-22 | 155 | 202 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.51E-12 | 155 | 195 | No hit | No description |
Pfam | PF00249 | 6.4E-15 | 155 | 195 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 682 aa Download sequence Send to blast |
MEVVKKEDTN VVTVAALSSP ISNISLDTAL PKLASVQGRT TGPTRRSTKG GWTEQEDDML 60 TKAVKRYNGK NWKKIAECFP GRSDVQCLHR WQKVLNPDLV KGPWSKEEDE RILELVDKYG 120 CKKWSVIAQS LPGRIGKQCR ERWHNHLNPA IKKHAWTKEE ELALIQAHQI YGNKWAEIAK 180 FLPGRADNSI KNHWNCSVKK KLDSYLASGF AGDLGINAYD SYNNEWKDGT IKLEVSAHDQ 240 EISCPLDPKK DSDDDIDFSL GVSVHELSCD EQKDIQSHLE PIQQENRCFK EEIDCQKELP 300 IRIHFECGRP SFECGRPSAR KLSTELLGED ANYDCTSDDV HHSSVETEVS CGISSRDFNS 360 SPRFSKELSL SLSSFGDPLD GMSGWKNGLS PDIPHPFATR RTPETPKRPR HYASCLHEFG 420 DLNSKSSVEC YTLFPNLLSG DCGHENGRAQ RKGQLVTTRL QSEDISFGPL FYEPPEQTNP 480 GVVVKNVQLE DSPLSCSTPP SSIGSISVNG RTPETILRTA AKNFKYTPSI IRKRARGTSG 540 QGCNANDFND VCMSEVKSGS STDTQGSPYS CDRVLAGQKN LTRAHLLDGK WLSLSMPSLQ 600 PELDVSTKAV EKCLEHAFDL AWDNSKAKCS DTVSESDSIS EISTSNIDLM PPNKSADSSR 660 ERTNHNFLML SLGINCVCDL N* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 5e-67 | 49 | 202 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 5e-67 | 49 | 202 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010255473.1 | 1e-176 | PREDICTED: uncharacterized protein LOC104596138 | ||||
Refseq | XP_010255474.1 | 1e-176 | PREDICTED: uncharacterized protein LOC104596138 | ||||
TrEMBL | A0A2G5E167 | 0.0 | A0A2G5E167_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_013_00366.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 7e-96 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G041000.1.p |