PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe7G037800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NF-YC
Protein Properties Length: 123aa    MW: 13267.3 Da    PI: 8.4879
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe7G037800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC112.12.9e-35221021998
              NF-YC  19 helPlarikkilk.adedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 
                        h+lPlarikki+k + +dvkmis eaP+++skacelfi elt+rswl + + krrtl+k d+aaa+ +tdifdflv  v +
  Aqcoe7G037800.1.p  22 HSLPLARIKKIMKkSGDDVKMISGEAPIVFSKACELFIEELTVRSWLVTLKGKRRTLHKEDVAAAIISTDIFDFLVSLVSN 102
                        99**********825689**********************************************************98876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471132.4E-261596IPR009072Histone-fold
Gene3DG3DSA:1.10.20.101.0E-301987IPR009072Histone-fold
PfamPF008083.7E-202387IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MRQAGTYSGI LSGGISGRTG PHSLPLARIK KIMKKSGDDV KMISGEAPIV FSKACELFIE  60
ELTVRSWLVT LKGKRRTLHK EDVAAAIIST DIFDFLVSLV SNSNGGYEAP DINGEEMVVE  120
NR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B2e-33221001693NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010934734.14e-69nuclear transcription factor Y subunit C-2
SwissprotQ655V52e-32NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2G5E1A16e-84A0A2G5E1A1_AQUCA; Uncharacterized protein
STRINGAquca_013_00352.11e-84(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-34nuclear factor Y, subunit C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]