PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G028200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 209aa MW: 23532 Da PI: 9.7263 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.4 | 1.6e-10 | 115 | 177 | 36 | 97 |
EEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE CS B3 36 ltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvf 97 ++ + +++ W++++ y + + + +GWk+F +n+L++gD +vF+l+ + ++ +++v+++ Aqcoe7G028200.1.p 115 PVILTCRNKNWKMQY-YGVGYAHQKFDSGWKNFSIDNKLNVGDGCVFELTeCStECIKFRVQIL 177 345566889******.7666666789**********************8854456777777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-13 | 79 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-12 | 79 | 177 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 9.17E-11 | 82 | 178 | No hit | No description |
PROSITE profile | PS50863 | 10.461 | 84 | 180 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.2E-8 | 95 | 176 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MSLSIIKLNA HHLVHSKSFP RASKSRPNPI FQMEFSARRD GPSEGEKSRG KAKQKIKAKT 60 NKSCINNSQQ QLDEHWPLSD KPYFHYILAD YQVQNQFLLV LPAKIHKVLP KAIVPVILTC 120 RNKNWKMQYY GVGYAHQKFD SGWKNFSIDN KLNVGDGCVF ELTECSTECI KFRVQILSGE 180 LPAELLNRGD GSNSTPDGAT PDTPIIIF* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010246420.1 | 1e-40 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | A0A2G5E0M9 | 1e-130 | A0A2G5E0M9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_013_00263.1 | 1e-131 | (Aquilegia coerulea) |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G028200.1.p |