PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe7G005100.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | Dof | ||||||||
Protein Properties | Length: 209aa MW: 23101.3 Da PI: 8.7772 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.8 | 6.4e-40 | 20 | 81 | 2 | 63 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknk+sss Aqcoe7G005100.3.p 20 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTDGGSLRNVPVGGGSRKNKRSSS 81 7899******************************************************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-26 | 12 | 69 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 9.9E-34 | 22 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.106 | 24 | 78 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 26 | 62 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MVNNTCSSRP MIERKARPQK EQALNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTD 60 GGSLRNVPVG GGSRKNKRSS SSSTSSGSAS ASSKKLSDHI TSQSQNPKIH EGHDLNLSFQ 120 ITEPYQNISE YVDQDFKPTL NFGVDHGLGG SGYGNIHQGG VQESSSGRLL FPFEDLRQVS 180 TITSEFEQNR GHGDSNGYWS GMLDGGSW* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021638405.1 | 5e-83 | dof zinc finger protein DOF4.6-like isoform X2 | ||||
Swissprot | Q43385 | 1e-44 | DOF37_ARATH; Dof zinc finger protein DOF3.7 | ||||
TrEMBL | A0A2G5DZG9 | 1e-153 | A0A2G5DZG9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_013_00047.1 | 1e-154 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61850.3 | 2e-35 | Dof family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe7G005100.3.p |