PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G327700.3.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

SBP

Protein Properties

Length: 951aa MW: 106195 Da PI: 8.2536

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G327700.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	122.2	2.3e-38	132	209	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C+ dls+ak+y+rrhkvC+ hsk+++ lv++++qrfCqqCsrfh l efD++krsCrrrLa+hn+rrrk+q+ Aqcoe6G327700.3.p 132 MCQVDDCRIDLSNAKDYQRRHKVCQLHSKTTKSLVRNQMQRFCQQCSRFHPLLEFDDGKRSCRRRLAGHNRRRRKSQP 209 6**************************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.6E-31	128	194	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.393	130	207	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	3.4E-35	131	211	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	5.9E-28	133	206	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	5.44E-8	794	931	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	7.8E-8	806	937	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.38E-7	806	936	No hit	No description
PROSITE profile	PS50088	8.549	877	898	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 951 aa Download sequence Send to blast
MEQLNLPPTP HTHPPFINQP SSTMPMPMPN NKRTHSNSRQ KLLHHHHHNF LHTTNWNPNI 60 WDWNTINFVA NSKPNPNPLP LNQQQDGHCN NLALNLSGRL FNTAQDNPSS TTEIRPNKRL 120 RSPSPTTTTY PMCQVDDCRI DLSNAKDYQR RHKVCQLHSK TTKSLVRNQM QRFCQQCSRF 180 HPLLEFDDGK RSCRRRLAGH NRRRRKSQPE DVSSQLLIPK IQENTDNSKL DVLNLLTALA 240 RLQKENNAQK TANGACMPDI DQAIHMPNKI NSLTVAPNST SRFPSTGGFD LNLVEQVPLE 300 DPKFLNGNTS AASTTDSLAV DSAALVVSRP DTLTALSQRS SQDNVDDKIK VDCPDHEAGF 360 SLQKRATPCS PSVKASNKQS QEACPTFPLQ LFSSSPEGES PLKLESSRNY LSSCSSDPME 420 ERSPSSSPPV VRRLFPLQAE LENIKHGCVS VSGGDNGMIA TSTANIWNSS YELHNSSSPK 480 ADNRLFCNLT SEPRYTSSSG SDHSPSSSNS DFQNRTGRII FKLFDKDPSD LPATLKTQIY 540 NWLSKSPSDM ESFIRPGCVV LSIFIAMPVT TWAQLQKDLM RCVQSLVQDA VSDFWRNGDF 600 LVQMDRQLAS HRSGNIRICK AWRTLSTPEL LSVSPLAIVS GQDTSLVLRG RKLTVPGTKI 660 CCTYMGKYMS KKVLGSADTV YEDTSIQSFD FLCGSPCVQG RCFIEVENGF KGNSFPIIIA 720 DANICGELRL LESELDNGAR ADDIVLEDEI QHFRRTKSRE DALHYLNELG WLFQRKSLSR 780 SYGLHFSLTR FRFLLLFSVE RDWCALVKTL LDIFVESNAG EDGLSKESRD TLDGSHLLSR 840 AVKRKCINMI NLLIQYTHAC QAGSLRYLFP PNKAGHDGIT PLHLAACTRD AEHVVDALTN 900 GAKEFGLACW TSQGDANGRS PYVYALMRNN HCYNKLVARK LADLECGVHL *

Sequence ? help Back to Top

Protein Sequence Length: 951 aa Download sequence Send to blast

MEQLNLPPTP HTHPPFINQP SSTMPMPMPN NKRTHSNSRQ KLLHHHHHNF LHTTNWNPNI  60
WDWNTINFVA NSKPNPNPLP LNQQQDGHCN NLALNLSGRL FNTAQDNPSS TTEIRPNKRL  120
RSPSPTTTTY PMCQVDDCRI DLSNAKDYQR RHKVCQLHSK TTKSLVRNQM QRFCQQCSRF  180
HPLLEFDDGK RSCRRRLAGH NRRRRKSQPE DVSSQLLIPK IQENTDNSKL DVLNLLTALA  240
RLQKENNAQK TANGACMPDI DQAIHMPNKI NSLTVAPNST SRFPSTGGFD LNLVEQVPLE  300
DPKFLNGNTS AASTTDSLAV DSAALVVSRP DTLTALSQRS SQDNVDDKIK VDCPDHEAGF  360
SLQKRATPCS PSVKASNKQS QEACPTFPLQ LFSSSPEGES PLKLESSRNY LSSCSSDPME  420
ERSPSSSPPV VRRLFPLQAE LENIKHGCVS VSGGDNGMIA TSTANIWNSS YELHNSSSPK  480
ADNRLFCNLT SEPRYTSSSG SDHSPSSSNS DFQNRTGRII FKLFDKDPSD LPATLKTQIY  540
NWLSKSPSDM ESFIRPGCVV LSIFIAMPVT TWAQLQKDLM RCVQSLVQDA VSDFWRNGDF  600
LVQMDRQLAS HRSGNIRICK AWRTLSTPEL LSVSPLAIVS GQDTSLVLRG RKLTVPGTKI  660
CCTYMGKYMS KKVLGSADTV YEDTSIQSFD FLCGSPCVQG RCFIEVENGF KGNSFPIIIA  720
DANICGELRL LESELDNGAR ADDIVLEDEI QHFRRTKSRE DALHYLNELG WLFQRKSLSR  780
SYGLHFSLTR FRFLLLFSVE RDWCALVKTL LDIFVESNAG EDGLSKESRD TLDGSHLLSR  840
AVKRKCINMI NLLIQYTHAC QAGSLRYLFP PNKAGHDGIT PLHLAACTRD AEHVVDALTN  900
GAKEFGLACW TSQGDANGRS PYVYALMRNN HCYNKLVARK LADLECGVHL *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-26	124	206	2	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270607.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
Swissprot	A2YX04	0.0	SPL15_ORYSI; Squamosa promoter-binding-like protein 15
Swissprot	Q6Z8M8	0.0	SPL15_ORYSJ; Squamosa promoter-binding-like protein 15
TrEMBL	A0A2G5C4T4	0.0	A0A2G5C4T4_AQUCA; Uncharacterized protein
STRING	Aquca_095_00046.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20980.1	0.0	squamosa promoter binding protein-like 14

Link Out ? help Back to Top
Phytozome	Aqcoe6G327700.3.p