PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G327700.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

SBP

Protein Properties

Length: 920aa MW: 102256 Da PI: 8.098

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G327700.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	111	7.4e-35	10	80	8	78
----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 8 eadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 + dls+ak+y+rrhkvC+ hsk+++ lv++++qrfCqqCsrfh l efD++krsCrrrLa+hn+rrrk+q+ Aqcoe6G327700.2.p 10 RIDLSNAKDYQRRHKVCQLHSKTTKSLVRNQMQRFCQQCSRFHPLLEFDDGKRSCRRRLAGHNRRRRKSQP 80 68******************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	26.068	1	78	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-24	10	77	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	2.3E-24	11	65	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.62E-30	11	82	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	4.97E-8	665	802	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	4.14E-7	677	807	No hit	No description
Gene3D	G3DSA:1.25.40.20	6.5E-8	677	810	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	8.549	748	769	IPR002110	Ankyrin repeat

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 920 aa Download sequence Send to blast
MNGLLDEQPR IDLSNAKDYQ RRHKVCQLHS KTTKSLVRNQ MQRFCQQCSR FHPLLEFDDG 60 KRSCRRRLAG HNRRRRKSQP EDVSSQLLIP KIQENTDNSK LDVLNLLTAL ARLQKENNAQ 120 KTANGACMPD IDQAIHMPNK INSLTVAPNS TSRFPSTGGF DLNLVEQVPL EDPKFLNGNT 180 SAASTTDSLA VDSAALVVSR PDTLTALSQR SSQDNVDDKI KVDCPDHEAG FSLQKRATPC 240 SPSVKASNKQ SQEACPTFPL QLFSSSPEGE SPLKLESSRN YLSSCSSDPM EERSPSSSPP 300 VVRRLFPLQA ELENIKHGCV SVSGGDNGMI ATSTANIWNS SYELHNSSSP KADNRLFCNL 360 TSEPRYTSSS GSDHSPSSSN SDFQNRTGRI IFKLFDKDPS DLPATLKTQI YNWLSKSPSD 420 MESFIRPGCV VLSIFIAMPV TTWAQLQKDL MRCVQSLVQD AVSDFWRNGD FLVQMDRQLA 480 SHRSGNIRIC KAWRTLSTPE LLSVSPLAIV SGQDTSLVLR GRKLTVPGTK ICCTYMGKYM 540 SKKVLGSADT VYEDTSIQSF DFLCGSPCVQ GRCFIEVENG FKGNSFPIII ADANICGELR 600 LLESELDNGA RADDIVLEDE IQHFRRTKSR EDALHYLNEL GWLFQRKSLS RSYGLHFSLT 660 RFRFLLLFSV ERDWCALVKT LLDIFVESNA GEDGLSKESR DTLDGSHLLS RAVKRKCINM 720 INLLIQYTHA CQAGSLRYLF PPNKAGHDGI TPLHLAACTR DAEHVVDALT NGAKEFGLAC 780 WTSQGDANGR SPYVYALMRN NHCYNKLVAR KLADLECGQV SVSVGDSISL NDSVILTEHA 840 DRTTSQSLQR PQSCTRCSFV MTRHYYKMPG TRGSVYRPYV HSMLTIAAVC VCVCLFLRGS 900 PDIGHVAPFK WENVHFGTI*

Sequence ? help Back to Top

Protein Sequence Length: 920 aa Download sequence Send to blast

MNGLLDEQPR IDLSNAKDYQ RRHKVCQLHS KTTKSLVRNQ MQRFCQQCSR FHPLLEFDDG  60
KRSCRRRLAG HNRRRRKSQP EDVSSQLLIP KIQENTDNSK LDVLNLLTAL ARLQKENNAQ  120
KTANGACMPD IDQAIHMPNK INSLTVAPNS TSRFPSTGGF DLNLVEQVPL EDPKFLNGNT  180
SAASTTDSLA VDSAALVVSR PDTLTALSQR SSQDNVDDKI KVDCPDHEAG FSLQKRATPC  240
SPSVKASNKQ SQEACPTFPL QLFSSSPEGE SPLKLESSRN YLSSCSSDPM EERSPSSSPP  300
VVRRLFPLQA ELENIKHGCV SVSGGDNGMI ATSTANIWNS SYELHNSSSP KADNRLFCNL  360
TSEPRYTSSS GSDHSPSSSN SDFQNRTGRI IFKLFDKDPS DLPATLKTQI YNWLSKSPSD  420
MESFIRPGCV VLSIFIAMPV TTWAQLQKDL MRCVQSLVQD AVSDFWRNGD FLVQMDRQLA  480
SHRSGNIRIC KAWRTLSTPE LLSVSPLAIV SGQDTSLVLR GRKLTVPGTK ICCTYMGKYM  540
SKKVLGSADT VYEDTSIQSF DFLCGSPCVQ GRCFIEVENG FKGNSFPIII ADANICGELR  600
LLESELDNGA RADDIVLEDE IQHFRRTKSR EDALHYLNEL GWLFQRKSLS RSYGLHFSLT  660
RFRFLLLFSV ERDWCALVKT LLDIFVESNA GEDGLSKESR DTLDGSHLLS RAVKRKCINM  720
INLLIQYTHA CQAGSLRYLF PPNKAGHDGI TPLHLAACTR DAEHVVDALT NGAKEFGLAC  780
WTSQGDANGR SPYVYALMRN NHCYNKLVAR KLADLECGQV SVSVGDSISL NDSVILTEHA  840
DRTTSQSLQR PQSCTRCSFV MTRHYYKMPG TRGSVYRPYV HSMLTIAAVC VCVCLFLRGS  900
PDIGHVAPFK WENVHFGTI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	6e-22	12	77	19	84	squamosa promoter binding protein-like 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010256977.1	0.0	PREDICTED: squamosa promoter-binding-like protein 14
TrEMBL	A0A2G5C4T4	0.0	A0A2G5C4T4_AQUCA; Uncharacterized protein
STRING	Aquca_095_00046.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76580.1	0.0	SBP family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G327700.2.p