PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G318700.1.p | ||||||||
Common Name | KN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | TALE | ||||||||
Protein Properties | Length: 406aa MW: 46482.5 Da PI: 6.2328 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.1 | 3.4e-09 | 332 | 367 | 20 | 55 |
HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 +k +yps++e+ LA+++gL+++q+ +WF N+R ++ Aqcoe6G318700.1.p 332 YKWPYPSETEKVALAESTGLDQKQINNWFINQRKRH 367 4679*****************************885 PP | |||||||
2 | ELK | 35.8 | 1.7e-12 | 287 | 308 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsgyL+sLkqE+s Aqcoe6G318700.1.p 287 ELKNHLLKKYSGYLSSLKQELS 308 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 1.6E-20 | 142 | 186 | IPR005540 | KNOX1 |
Pfam | PF03790 | 1.1E-21 | 144 | 185 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.8E-27 | 195 | 246 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-24 | 199 | 244 | IPR005541 | KNOX2 |
SMART | SM01188 | 1.0E-6 | 287 | 308 | IPR005539 | ELK domain |
Pfam | PF03789 | 8.1E-10 | 287 | 308 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.243 | 287 | 307 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 13.038 | 307 | 370 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.5E-19 | 308 | 380 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 6.6E-13 | 309 | 374 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-27 | 312 | 372 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.84E-12 | 319 | 371 | No hit | No description |
Pfam | PF05920 | 1.6E-16 | 327 | 366 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 345 | 368 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001708 | Biological Process | cell fate specification | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MEDNYTPTTN NTRGSFLYCA PTPNVAPPNS TSSSSSLYGR NNNNNLEMNS FHIQSSNQQS 60 SFVKTEATQA AAGAASSSQH AGHQDFPYSL LSSADHHHQQ QQQQQQQHQQ QTINHFPLPH 120 QEQQDQGGER IGSRSFLFDN LDVIKAKIIT HPQYSNLLEA YMDCQKVGAP AEVVNRLTAV 180 RSEFETNQKA NLKMNYTSAH GDPELDQFME AYCDMLAKYR EELTRPLHEA MEFMRRIEEQ 240 LKSISNEPLH IFTDEKCDGL GSSEDDQDDS RGETEVPEID PRAEDRELKN HLLKKYSGYL 300 SSLKQELSKK KKKGKLPKEA RQKLLNWWEL HYKWPYPSET EKVALAESTG LDQKQINNWF 360 INQRKRHWKP SEDMQFVMME GLHPQNAGLY MDGHFMADGN YRLGP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably binds to the DNA sequence 5'-TGAC-3'. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC854334 | 0.0 | KC854334.1 Aquilegia coerulea KN (KN) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010245637.1 | 1e-159 | PREDICTED: homeobox protein knotted-1-like 2 | ||||
Swissprot | O04135 | 1e-147 | KNAP2_MALDO; Homeobox protein knotted-1-like 2 | ||||
TrEMBL | A0A2G5C162 | 0.0 | A0A2G5C162_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_133_00021.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 1e-121 | KNOTTED-like from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G318700.1.p |