PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G309000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 365aa MW: 42019.6 Da PI: 6.9404

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G309000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.7	9.7e-29	61	148	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+Y+ ++GFs+rks++++s+ + ei+ rtf+Cs eg r+++ k+ e++ r+ra t+tgCka ++v+k+ ++w+v+k+ ++HnH+l+ Aqcoe6G309000.1.p 61 NFYNRYGANMGFSIRKSTTNRSRITSEIIGRTFCCSLEGVRDPRAKTVEERIRNRADTKTGCKAIMVVRKK--KTWRVSKVIEDHNHALV 148 6********************************************9*****************99..9************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-25	61	148	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MVDGSDIQDE SEKIFINITR DENEPMCENG AGEEHVVNKT DRNVQCPCVG MEFSSHEEAY 60 NFYNRYGANM GFSIRKSTTN RSRITSEIIG RTFCCSLEGV RDPRAKTVEE RIRNRADTKT 120 GCKAIMVVRK KKTWRVSKVI EDHNHALVTP SQRHRLRSQR SVGSTQGHIM DNMLTAGIRR 180 NLMGSFLAKL ANGDAQAVLD HLRQQQMKNP AFFYTIQIDS EGRMTNFYGL MQDLGWITIT 240 SAMSYVLILH MEQINVGINH YYQTVLFGGA LLYSETEETF VWIILTDQES VIGGAIKQVL 300 PETRHYYCSW RIGRNAMKHL VHEINSQPDF YSNFNKCIYD YETIPEFQNV WDTMIQKYNL 360 EENN*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MVDGSDIQDE SEKIFINITR DENEPMCENG AGEEHVVNKT DRNVQCPCVG MEFSSHEEAY  60
NFYNRYGANM GFSIRKSTTN RSRITSEIIG RTFCCSLEGV RDPRAKTVEE RIRNRADTKT  120
GCKAIMVVRK KKTWRVSKVI EDHNHALVTP SQRHRLRSQR SVGSTQGHIM DNMLTAGIRR  180
NLMGSFLAKL ANGDAQAVLD HLRQQQMKNP AFFYTIQIDS EGRMTNFYGL MQDLGWITIT  240
SAMSYVLILH MEQINVGINH YYQTVLFGGA LLYSETEETF VWIILTDQES VIGGAIKQVL  300
PETRHYYCSW RIGRNAMKHL VHEINSQPDF YSNFNKCIYD YETIPEFQNV WDTMIQKYNL  360
EENN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026428671.1	1e-98	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	3e-52	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe6G309000.1.p