PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G302400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

HB-PHD

Protein Properties

Length: 1210aa MW: 132789 Da PI: 4.6533

Description

HB-PHD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G302400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	36.6	7.6e-12	936	981	9	54
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 k+ +e+L+ F++n yp++++re LAk+lgLt ++V+ WF R Aqcoe6G302400.1.p 936 KSITERLKGSFKENEYPTRATRENLAKELGLTVQKVTKWFGSARWS 981 556899**********************************988865 PP
2	PHD	36.9	8.5e-13	566	621	1	51
SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C + ++++++lCdg C++ fH+ Cl+++ +ee+p g wlC+ C++k Aqcoe6G302400.1.p 566 FCAKCASkdLSADNDIILCDGfCNRGFHQMCLEPPMLKEEIPPGdeGWLCPGCDCK 621 699999977677******88****************9999*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57903	5.32E-13	557	624	IPR011011	Zinc finger, FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	3.1E-12	563	621	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50016	10.914	564	621	IPR019787	Zinc finger, PHD-finger
CDD	cd15504	3.14E-27	566	618	No hit	No description
SMART	SM00249	1.2E-8	566	619	IPR001965	Zinc finger, PHD-type
Pfam	PF00628	2.5E-10	566	621	IPR019787	Zinc finger, PHD-finger
PROSITE pattern	PS01359	0	567	618	IPR019786	Zinc finger, PHD-type, conserved site
CDD	cd00086	1.19E-11	923	986	No hit	No description
SMART	SM00389	1.4E-9	927	989	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.28E-10	931	984	IPR009057	Homeodomain-like
Pfam	PF00046	2.8E-9	936	981	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.0E-11	939	988	IPR009057	Homeodomain-like
PROSITE profile	PS50071	12.39	942	985	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1210 aa Download sequence Send to blast
MDAASPEESC QIHSSSLKEI TTGEMHTPLP NEPLKTMIRG SVAQNCQSSE GLIWEQNTSE 60 KIHEIGYNCV SSEPMDKSDV EEKCHIPGNS ISNESTLGGK PERDAEFVSS EPRGKFNAEE 120 KCHIAGNSIS KENTLGGKLE HDAEFVLGEP MEIEKAVYNN ADSCQMRGSC HDELCPEHVQ 180 GEQMDTGIVG SDFVDVGLSS TPLMCETQNF NELGHAEITV SSKSKESTLG GKSDGDYEHV 240 HVHGEPMQTM NAVSSAHNSH MSGTGYNEHC SEYARDEPME TRIVGSDSAD LGLVNTPLIC 300 ETRNTNGLGH TQTTVSSMSK ESTLGGYLAK NEKPRRDSEL VIGEPMEIGN AGSSYNCQTM 360 GTLQNELCSV HVQGEPMETR MVGSDAIDVG LSNTPLIHET QNSSEHGHTE TTVSSRPRKR 420 KSVLKSSPAT PRVLRPRVNG LCKPPEQSGS SANISAEREK KRKKMKRTRE LLDNEYSKTR 480 KRLRYLLTRM GYEHNFIDAY SGEGWKGQSA EKIKPEKELQ RATSEILRCK RRIRELFQHL 540 DSLCAEGRFH ESLFDSEGLI SSEDIFCAKC ASKDLSADND IILCDGFCNR GFHQMCLEPP 600 MLKEEIPPGD EGWLCPGCDC KVDCIDLLND SQGTNLSMDD AWEKVFPEAA ATEAGDLTNE 660 ILGLPSDDSE DYEYDPDASD MKEGVDMEGS SSDDSSLDSD FTSASDDLEV CPIEDPYMGL 720 PSDDSEDVEY DPNAPDLDET KEESSSSDFT SASEYFSASS DANGSSGTED VLVPGSSNRR 780 SKMARSKKQS VSSELLSILE PNSQGDPSPV LGKRQCERLD YKKLHDEAYG NASTDSSDDQ 840 DWSEAKAHPE KTDDGIGEES SLSPKVNSQT IMRRRKTKAS QSKDTEEIRN TSERRTRQKK 900 ESNGATSTAI ETCTDSSQLE LIKERTTPTG YNTLGKSITE RLKGSFKENE YPTRATRENL 960 AKELGLTVQK VTKWFGSARW SLRHSSNNGR AQKVSQTKDQ STHKLANDVD SYNVADQEAE 1020 EASDAQTLRN GSNCNFDVGH PSINRISSNN KDQTTGEHVD PETGGSPNDV DGKSVQDREL 1080 GKAGTPKTLK NDVDVQLSDH TLNEASSNNK DQTSSKLVEP ETKILHADVP SYNVEDQDLG 1140 EAVTPKTMNN ANLDDQTLKD TSSDRILVIS IPATSPKTQQ SRKRGRKINQ VASPTQIQTR 1200 SKKKVGQTD*

Sequence ? help Back to Top

Protein Sequence Length: 1210 aa Download sequence Send to blast

MDAASPEESC QIHSSSLKEI TTGEMHTPLP NEPLKTMIRG SVAQNCQSSE GLIWEQNTSE  60
KIHEIGYNCV SSEPMDKSDV EEKCHIPGNS ISNESTLGGK PERDAEFVSS EPRGKFNAEE  120
KCHIAGNSIS KENTLGGKLE HDAEFVLGEP MEIEKAVYNN ADSCQMRGSC HDELCPEHVQ  180
GEQMDTGIVG SDFVDVGLSS TPLMCETQNF NELGHAEITV SSKSKESTLG GKSDGDYEHV  240
HVHGEPMQTM NAVSSAHNSH MSGTGYNEHC SEYARDEPME TRIVGSDSAD LGLVNTPLIC  300
ETRNTNGLGH TQTTVSSMSK ESTLGGYLAK NEKPRRDSEL VIGEPMEIGN AGSSYNCQTM  360
GTLQNELCSV HVQGEPMETR MVGSDAIDVG LSNTPLIHET QNSSEHGHTE TTVSSRPRKR  420
KSVLKSSPAT PRVLRPRVNG LCKPPEQSGS SANISAEREK KRKKMKRTRE LLDNEYSKTR  480
KRLRYLLTRM GYEHNFIDAY SGEGWKGQSA EKIKPEKELQ RATSEILRCK RRIRELFQHL  540
DSLCAEGRFH ESLFDSEGLI SSEDIFCAKC ASKDLSADND IILCDGFCNR GFHQMCLEPP  600
MLKEEIPPGD EGWLCPGCDC KVDCIDLLND SQGTNLSMDD AWEKVFPEAA ATEAGDLTNE  660
ILGLPSDDSE DYEYDPDASD MKEGVDMEGS SSDDSSLDSD FTSASDDLEV CPIEDPYMGL  720
PSDDSEDVEY DPNAPDLDET KEESSSSDFT SASEYFSASS DANGSSGTED VLVPGSSNRR  780
SKMARSKKQS VSSELLSILE PNSQGDPSPV LGKRQCERLD YKKLHDEAYG NASTDSSDDQ  840
DWSEAKAHPE KTDDGIGEES SLSPKVNSQT IMRRRKTKAS QSKDTEEIRN TSERRTRQKK  900
ESNGATSTAI ETCTDSSQLE LIKERTTPTG YNTLGKSITE RLKGSFKENE YPTRATRENL  960
AKELGLTVQK VTKWFGSARW SLRHSSNNGR AQKVSQTKDQ STHKLANDVD SYNVADQEAE  1020
EASDAQTLRN GSNCNFDVGH PSINRISSNN KDQTTGEHVD PETGGSPNDV DGKSVQDREL  1080
GKAGTPKTLK NDVDVQLSDH TLNEASSNNK DQTSSKLVEP ETKILHADVP SYNVEDQDLG  1140
EAVTPKTMNN ANLDDQTLKD TSSDRILVIS IPATSPKTQQ SRKRGRKINQ VASPTQIQTR  1200
SKKKVGQTD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	459	463	KKRKK
2	871	876	MRRRKT
3	872	877	RRRKTK
4	893	899	RRTRQKK
5	893	900	RRTRQKKE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271495.1	0.0	PREDICTED: homeobox protein HOX1A
Refseq	XP_010271502.1	0.0	PREDICTED: homeobox protein HOX1A
TrEMBL	A0A2G5C6V6	0.0	A0A2G5C6V6_AQUCA; Uncharacterized protein
STRING	Aquca_083_00002.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19510.1	4e-83	Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain

Link Out ? help Back to Top
Phytozome	Aqcoe6G302400.1.p