PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G287900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 459aa    MW: 51047.3 Da    PI: 5.7664
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G287900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.92.3e-94524552373
               GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl..fsevs 88 
                        ++lL++cA+a++s+d++laq++L+ l+++a pdgd++qRl+  f++AL +r a+  ++++k+l++ ++s+ n   +++++++ +l  f +++
  Aqcoe6G287900.1.p  52 EQLLVHCANAIESNDATLAQQILWVLNNIAPPDGDSNQRLTCGFLRALISRAAK--TGCCKILTAMANSNPNlsiHTHKFSVIELasFIDLT 141
                        79****************************************************..7777777666666555344555555555588***** PP

               GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfe 177
                        P+++f++ +aN aIlea+eg + vHiiD++ ++++Q p+L++a+a+Rp+gpp +++T+ gs +        ++ee+g++L +fA++ +v +e
  Aqcoe6G287900.1.p 142 PWHRFGFSAANAAILEAIEGFSSVHIIDLSSTHCMQIPTLIDAIANRPDGPPFIKLTVAGSTADIppmLDLSYEELGSKLVNFARSRNVGLE 233
                        *************************************************************666698888999******************* PP

               GRAS 178 fnvl.......vakrledleleeLrvkp...gEalaVnlvlqlhrll..................desvsleserdevLklvkslsPkvvvv 241
                        f+v+         + +e++++++L + +    Eal++n++++lh+++                   es s++s r+ +Lk+++sl P++vv+
  Aqcoe6G287900.1.p 234 FRVIpssssdgFLSLIEQVRVQQLVFAQdskTEALVINCHMMLHSIPeethgavipdninpalyaFESSSQSSLRTMFLKALRSLDPTIVVL 325
                        ****9887777777788899999988888899********************************97777788889***************** PP

               GRAS 242 veqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333
                        v+++ad +s++++ r+ +a+++ +  +d++++ l res++r+++E+  l ++i+nv+a+eg +r+er e +++W +r+++a Fk +p+se+a
  Aqcoe6G287900.1.p 326 VDEDADFTSNDLVCRLRSAFNFLWIPYDAVDTFLRRESKQRQWYEAD-LCWKIENVIAQEGVQRVERLEPKSRWVQRMRNARFKGIPFSEDA 416
                        ***********************************************.99****************************************** PP

               GRAS 334 akqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                         +++k++l +++  g+ +++e++ lvl+Wk++++v+++aW
  Aqcoe6G287900.1.p 417 LSEVKSMLDEHA-AGWGLKKEEDDLVLTWKGHNVVFATAW 455
                        ************.8999*********************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098543.63525437IPR005202Transcription factor GRAS
SuperFamilySSF483712.21E-539120IPR016024Armadillo-type fold
PfamPF035147.9E-9252455IPR005202Transcription factor GRAS
SuperFamilySSF483712.21E-5208318IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005488Molecular Functionbinding
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    Send to blast
MMQFTESPPL PLHQNNFNSC SNLIMSKNPR SPWPGFPTSK ALGSFGDANC MEQLLVHCAN  60
AIESNDATLA QQILWVLNNI APPDGDSNQR LTCGFLRALI SRAAKTGCCK ILTAMANSNP  120
NLSIHTHKFS VIELASFIDL TPWHRFGFSA ANAAILEAIE GFSSVHIIDL SSTHCMQIPT  180
LIDAIANRPD GPPFIKLTVA GSTADIPPML DLSYEELGSK LVNFARSRNV GLEFRVIPSS  240
SSDGFLSLIE QVRVQQLVFA QDSKTEALVI NCHMMLHSIP EETHGAVIPD NINPALYAFE  300
SSSQSSLRTM FLKALRSLDP TIVVLVDEDA DFTSNDLVCR LRSAFNFLWI PYDAVDTFLR  360
RESKQRQWYE ADLCWKIENV IAQEGVQRVE RLEPKSRWVQ RMRNARFKGI PFSEDALSEV  420
KSMLDEHAAG WGLKKEEDDL VLTWKGHNVV FATAWIPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-502945772474Protein SHORT-ROOT
5b3h_B2e-502945718420Protein SHORT-ROOT
5b3h_E2e-502945718420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021274418.10.0scarecrow-like protein 32 isoform X1
SwissprotQ9SN221e-178SCL32_ARATH; Scarecrow-like protein 32
TrEMBLA0A2G5CPD60.0A0A2G5CPD6_AQUCA; Uncharacterized protein
STRINGAquca_042_00139.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.10.0GRAS family protein