PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G278000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 726aa    MW: 84132.6 Da    PI: 8.8188
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G278000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR187.91.5e-2754144190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fYn+YA +vGFsvrk+++++s+ n+ei  r f+Cs eg+r ++ k+ e++ r+ a trtgCka++ + k+k  +kw+vt++++ HnH+l+
  Aqcoe6G278000.1.p  54 NFYNHYAGRVGFSVRKNSTYRSRINNEIAGRIFCCSLEGSRGSKCKSFEEKVRNVADTRTGCKAMMAIWKNKvGEKWVVTQVVEVHNHTLV 144
                        6**********************************************************************99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-2354144IPR004330FAR1 DNA binding domain
PfamPF105511.5E-31254348IPR018289MULE transposase domain
PROSITE profilePS509669.829503541IPR007527Zinc finger, SWIM-type
SMARTSM005750.0031516543IPR006564Zinc finger, PMZ-type
PfamPF044341.6E-4516537IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MIENSSSEGL ETTEPNIDEK IQKIINEEVN EDGDNIIGRP CVGMEFDSQD EAYNFYNHYA  60
GRVGFSVRKN STYRSRINNE IAGRIFCCSL EGSRGSKCKS FEEKVRNVAD TRTGCKAMMA  120
IWKNKVGEKW VVTQVVEVHN HTLVTPTKRY LLRSQRRMEP IQKKIVENMC SVGIRTRVQN  180
VGFTRKDVNN YLNAKRQKEL AVGDAQALLD HLQKQQLDNP SFSYSIQVDS EGRMTNLFWA  240
DARSRIDYQY CGDVVCFDPT YGTNRYDMPF VSIVGVNHHS QTVLFGGALL YSETEESFAW  300
VMRTWMNAMN DKQPNVILTD QESAIGGVVA HVLPNCRHRY CLWHICQNDI KHLAREINTQ  360
KDFWKAFNDC LYDYETIEEF EIGWNQMLVK YKLVENKWVK TLFEKREKWA SVYARNIFCA  420
RMYTTQRSES INSYFDKYLK KGQYKREEEN KADFDTYYRR PILRVYMEIE KEGAKIYTRK  480
IFYEFQEQVF QVYNVWKEGH EQVARTVEFE PATQSAKCSC LLFEFVSYLC RHVLKIFMVE  540
DVQNIPEQYK LKRWTKDAKS GSLMANESEN NLVKSGDSVT SRYCRICQEG VNIASKASPY  600
AAVFDVAMEG FARTLRDVEI TLKSLSLDSN LVQSENVESD QNGETSVAHV QLNTQKPLLD  660
PPIKKHKGRD PGRKLPWFEK SGQKKKNVSK KASRGGRKKQ ALIAEKSTIQ KNSNNKFRYL  720
LAYLV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245233.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
RefseqXP_010245234.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A1U7YZY60.0A0A1U7YZY6_NELNU; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_010245233.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-130FAR1-related sequence 5