PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G259300.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 314aa    MW: 34591.3 Da    PI: 6.7118
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G259300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.61.2e-1661112155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+fgt eeAa+a++ a+ k++g
  Aqcoe6G259300.2.p  61 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFGTQEEAAEAYDIAAIKFRG 112
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510328.847126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-4226IPR001471AP2/ERF domain
SuperFamilySSF541714.51E-1861121IPR016177DNA-binding domain
CDDcd000181.47E-2561120No hitNo description
PfamPF008472.0E-1161112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-1862120IPR001471AP2/ERF domain
PROSITE profilePS5103218.86162120IPR001471AP2/ERF domain
SMARTSM003809.4E-3462126IPR001471AP2/ERF domain
PRINTSPR003674.3E-56374IPR001471AP2/ERF domain
PRINTSPR003674.3E-5102122IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEEKAARAYD LAALKYWGAS TYINFSLENY QAELEEMKNM TRQEYVAHLR RKSSGFSRGA  60
SIYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFGTQEEAA EAYDIAAIKF RGTNAVTNFD  120
MTRYDVERIM ASNTLLAGEH AKRNKEITAS NEAIDHHPST QNSNGDVGLS EEHTVGGPDW  180
KMVMYQSSPH GPSDVAESIE QKPNGIGNYR NSSFSGALHD LIELHNMNSD QLVDDSATLG  240
VHLSNSSSLV TSVNSSREGS PDKNGMSMLF ARPTSTSKFI NPVTSMNSWI SSAQLRPAGS  300
MSHMPMFAAW TDT*
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of adventitious (crown) root formation by promoting its initiation. Promotes adventitious root initiation through repression of cytokinin signaling by positively regulating the two-component response regulator RR1. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1. {ECO:0000269|PubMed:21481033}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin. {ECO:0000269|PubMed:21481033}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248341.11e-162PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ84Z021e-107CRL5_ORYSJ; AP2-like ethylene-responsive transcription factor CRL5
TrEMBLA0A2G5EMQ10.0A0A2G5EMQ1_AQUCA; Uncharacterized protein
STRINGAquca_006_00055.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.13e-86AP2 family protein
Publications ? help Back to Top
  1. Kitomi Y, et al.
    The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
    Plant J., 2011. 67(3): p. 472-84
    [PMID:21481033]
  2. Li P,Xue H
    Structural characterization and expression pattern analysis of the rice PLT gene family.
    Acta Biochim. Biophys. Sin. (Shanghai), 2011. 43(9): p. 688-97
    [PMID:21807632]