PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G257700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 384aa    MW: 44755 Da    PI: 8.9471
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G257700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR123.61.6e-073575140
               FAR1  1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegk 40
                       ++Yn+YA  +GFsvrk++s++s +  ++i+k++f+Cs+e +
  Aqcoe6G257700.1.p 35 DYYNSYAFVLGFSVRKKRSNSSeSILRRIVKSQFCCSCEEF 75
                       69***************99999567889*********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-53576IPR004330FAR1 DNA binding domain
PfamPF105511.6E-12186244IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEHSGSNVED LSKEPTRDVV PQLGMSFDTV KETYDYYNSY AFVLGFSVRK KRSNSSESIL  60
RRIVKSQFCC SCEEFEIRLK DEKYVLTKFI ADHNHELVPT WNSNLLRAKF TLITVQKLGD  120
HKIQKNEKKL FRKETHNLCL NILRMRKRKT SSFFYSIRHN EDNEITSVFF CDARSRRHYG  180
MFGDAMCFDT TFKTNNYNMI CAPIIGVNSH GQTIFFGCGL LDGETTDAFI CSIYTFSTQL  240
KKCIYEPETI SEFEEYWDAM LEKYGLRDNV WLQGLYKSRE KWGQVYAPAF FCAGMTTTQR  300
SESINAFLKR FFGTTLVLRE FVELYSQAMD HRCQKERIAE TNTKQTAANL LSNWLVEKEA  360
SKKYTRKVLK FSKTNTRNSS TFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149MRKRKT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2538470.0AC253847.1 Aquilegia coerulea clone COL01-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.21e-102protein FAR1-RELATED SEQUENCE 5
TrEMBLM5Y1H31e-101M5Y1H3_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ255101e-102(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-48FAR1-related sequence 5