PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G255000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 359aa    MW: 39781.8 Da    PI: 4.7417
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G255000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.6e-18270304135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        Cs+Cg+ kTp+WR gp g ktLCnaCG++y++ +l
  Aqcoe6G255000.1.p 270 CSHCGVQKTPQWRTGPLGAKTLCNACGVRYKSGRL 304
                        *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.0E-761357IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.78264300IPR000679Zinc finger, GATA-type
SMARTSM004014.5E-15264318IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.42E-14267327No hitNo description
Gene3DG3DSA:3.30.50.101.3E-14268302IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.63E-15269326No hitNo description
PROSITE patternPS003440270295IPR000679Zinc finger, GATA-type
PfamPF003202.0E-16270304IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDCVETKALK NSFWSSSFKP ITPQVFSSED VLLCGNGTNN DDLFVEGLLD FSNNDEEDIL  60
QEKNDNFVIN QYEHEEVEDE EAEEIEDDEE VKGFSSGSSS QDQDQNSNSS SQVKNEFGSV  120
PTSELSVPTD ELADLEWLSH FVEDSFSEFS LQHLVEKPEE KLSGSEPGHE TPKLKPITGF  180
LSSVPAKARS KRSRTGGRIW SLGSLLPFSE SSSSSSSTSS SSSSSCLVFN NSGPGQNYEL  240
FSYLAGSKPP PTKKQKRKPM TEAQLQQRRC SHCGVQKTPQ WRTGPLGAKT LCNACGVRYK  300
SGRLLPEYRP ACSPTFSSEV HSNNHRKVLE MRRKKEVILP EAELTHPVQF ISENVVSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008241780.12e-86PREDICTED: GATA transcription factor 5-like
SwissprotQ9FH579e-71GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2G5EN520.0A0A2G5EN52_AQUCA; GATA transcription factor
STRINGAquca_006_00093.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.21e-66GATA transcription factor 5