PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G207300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family E2F/DP
Protein Properties Length: 497aa    MW: 55266.9 Da    PI: 6.4093
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G207300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP83.71.5e-26206271171
            E2F_TDP   1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                        r+++sL+llt+kf++ll ++++g+++ln+ a+ L   +v  ++RRiYDi+NVLe+++liek++kn+irwkg
  Aqcoe6G207300.1.p 206 RYDSSLGLLTKKFITLLLEAKDGTLDLNKTADVL---EV--QKRRIYDITNVLEGIGLIEKTSKNNIRWKG 271
                        6899******************************...99..****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.0E-28204272IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.9E-35206271IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.86E-17206269IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.0E-24208271IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF1440741.99E-23283388No hitNo description
CDDcd146602.06E-33283387No hitNo description
PfamPF164211.5E-24287386IPR032198E2F transcription factor, CC-MB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MSIISSGQEP NCSNPPNNIN NKFQFPHSHS YQLYGPLNRH HFPSSSCKPA AVAPPPPPLP  60
PPFSSSSNLV SPSCGMITGI NISSDVKHDF NTPLPNTANF FHLNETPKID QSEAQGQLGT  120
SQRHAEAVNF HSQITYLAGT SDKRFQTGEW IASLGHTEPT SPLKPVSGTG GRRYSRPKFS  180
KHTTSGPQNT TSDADSTIHP SGGSCRYDSS LGLLTKKFIT LLLEAKDGTL DLNKTADVLE  240
VQKRRIYDIT NVLEGIGLIE KTSKNNIRWK GLDFSRLLEL DGQVARLKAE IRRLYNEEYS  300
IDDEIRKQKE RLRALDEDKN SRKFIFLTEE DIVSLPCFQN KTLIAIKAPK ASSVEVLDPD  360
QDFDCSESQF QIIIRSTTGP IDLYLVSTSN RMPTDITFKH MPSLRKENGG NSEAAFLSKI  420
QNLGLTSIPP HVTGIQKIVP SEANIDDDYW FNTDANVHMT DLWANDDWDR VKEFIEHEFP  480
ESGAATVEQP HSCCLR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A2e-25200272174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010255152.11e-132PREDICTED: transcription factor E2FC-like
TrEMBLA0A2G5ENA40.0A0A2G5ENA4_AQUCA; Uncharacterized protein
STRINGAquca_006_00176.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22220.36e-86E2F transcription factor 1