PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G176900.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Nin-like

Protein Properties

Length: 936aa MW: 104659 Da PI: 6.9834

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G176900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.2	3.9e-29	611	661	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GIkRWP+Rkik++ Aqcoe6G176900.2.p 611 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGIKRWPSRKIKKV 661 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	5.89E-5	200	305	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	1.7E-4	214	297	IPR029016	GAF domain-like
PROSITE profile	PS51519	17.211	600	681	IPR003035	RWP-RK domain
Pfam	PF02042	7.7E-25	613	661	IPR003035	RWP-RK domain
Gene3D	G3DSA:3.10.20.240	7.3E-22	837	918	No hit	No description
SuperFamily	SSF54277	2.8E-21	837	923	No hit	No description
PROSITE profile	PS51745	23.045	837	920	IPR000270	PB1 domain
SMART	SM00666	3.8E-24	837	920	IPR000270	PB1 domain
CDD	cd06407	6.37E-40	838	919	No hit	No description
Pfam	PF00564	1.2E-18	839	919	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 936 aa Download sequence Send to blast
MEEGSYPQNT TLGNLSNTTM DYDLMDDLLL EGCWLEAGRS NFLQSDPSTS TALYSPSSFF 60 WPGTEIDYRF PNLNQVEENT QQVKERSIIP EDQSSIELHT ENPIEPHFIN PNANVIAKIS 120 RQSEYYLPEE FSELSRKWWI GPRDNLGSFP SVRERLFQAL RCIKKSLGKE DVLIQIWVPV 180 KSGHKQVLTT SDQPYELDPK CQRLASYRNV SMGYQFPAEE NSNESVGLPG RVFLQKVPEW 240 TPDVRYFSRD EYPRIGYAHE YDVRGTIAVP IFERGNRSCL GVLEVVMTTQ KINYNSELEH 300 VCQALEAVDL RSSDVSVRPS EKACCKSSYQ TALPEIAEVL KAVCETHRLP LAQIWVPCIQ 360 QGKGGCRHSD DNYALCISTI DSACCVTDSL HEFHEACSAH HLFIGEGVAG RAFLTNKPCL 420 STDITAFSKK QYPLKHYAKM FELRAAVAMR LRSIHDGRVD YVFEFFLPDC QDSDEQMRMC 480 DSLSIIVHQR CRNLRLITDK EVEEENIQRI CGVVIPSDGV VNAEEIPKLG PALSNDSMQA 540 SWITSMIKAQ QKGKFTEKEG VSEGFKVTSQ WIKPKELHND SKIKSTANSS IGQRSFSTVT 600 KTIEKKRTKV EKTISLQVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI KRWPSRKIKK 660 VGHSLRKLQV VMDSVQGAEG SFKIGSLYAN FPELTSPNLS GSSVFSASKE KNLLKQLNPV 720 PEGTIRQSAD VAFSPRAAAS KSPSSSCSQS SNSSLCGSSG QHKHPLVAQF PSSEDGLRAE 780 DLGGVLKRAR SDAALQVSFQ EEPKLLERCH SLKSLAEHPG LANLPLLPEN ISGEKVALRA 840 KVTFGEEKVR FSMQTTWGIN DLRQEISKRF HIDDMSTINL KYLDDDSEWI LLTCDADVEE 900 CIEVYKSSRT QTIKFSLHQA SQPNLGSSIG SNGLS*

Sequence ? help Back to Top

Protein Sequence Length: 936 aa Download sequence Send to blast

MEEGSYPQNT TLGNLSNTTM DYDLMDDLLL EGCWLEAGRS NFLQSDPSTS TALYSPSSFF  60
WPGTEIDYRF PNLNQVEENT QQVKERSIIP EDQSSIELHT ENPIEPHFIN PNANVIAKIS  120
RQSEYYLPEE FSELSRKWWI GPRDNLGSFP SVRERLFQAL RCIKKSLGKE DVLIQIWVPV  180
KSGHKQVLTT SDQPYELDPK CQRLASYRNV SMGYQFPAEE NSNESVGLPG RVFLQKVPEW  240
TPDVRYFSRD EYPRIGYAHE YDVRGTIAVP IFERGNRSCL GVLEVVMTTQ KINYNSELEH  300
VCQALEAVDL RSSDVSVRPS EKACCKSSYQ TALPEIAEVL KAVCETHRLP LAQIWVPCIQ  360
QGKGGCRHSD DNYALCISTI DSACCVTDSL HEFHEACSAH HLFIGEGVAG RAFLTNKPCL  420
STDITAFSKK QYPLKHYAKM FELRAAVAMR LRSIHDGRVD YVFEFFLPDC QDSDEQMRMC  480
DSLSIIVHQR CRNLRLITDK EVEEENIQRI CGVVIPSDGV VNAEEIPKLG PALSNDSMQA  540
SWITSMIKAQ QKGKFTEKEG VSEGFKVTSQ WIKPKELHND SKIKSTANSS IGQRSFSTVT  600
KTIEKKRTKV EKTISLQVLR QYFAGSLKDA AKSIGVCPTT LKRICRQHGI KRWPSRKIKK  660
VGHSLRKLQV VMDSVQGAEG SFKIGSLYAN FPELTSPNLS GSSVFSASKE KNLLKQLNPV  720
PEGTIRQSAD VAFSPRAAAS KSPSSSCSQS SNSSLCGSSG QHKHPLVAQF PSSEDGLRAE  780
DLGGVLKRAR SDAALQVSFQ EEPKLLERCH SLKSLAEHPG LANLPLLPEN ISGEKVALRA  840
KVTFGEEKVR FSMQTTWGIN DLRQEISKRF HIDDMSTINL KYLDDDSEWI LLTCDADVEE  900
CIEVYKSSRT QTIKFSLHQA SQPNLGSSIG SNGLS*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010266179.1	0.0	PREDICTED: protein NLP4
Refseq	XP_010266180.1	0.0	PREDICTED: protein NLP4
TrEMBL	A0A2G5DTB1	0.0	A0A2G5DTB1_AQUCA; Uncharacterized protein
STRING	Aquca_015_00363.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G176900.2.p