PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G173100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

WOX

Protein Properties

Length: 285aa MW: 32531.8 Da PI: 7.1153

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G173100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	115	175	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++L + F + n p + ++++++++l ++e++V++WFqNrRa+ k+ Aqcoe6G173100.1.p 115 RQRWTPTPVQLQILDRIFDEgNGFPGKLKIKDITNELtqhgPISETNVSNWFQNRRARSKR 175 89***************99***************99***************97 PP
2	Wus_type_Homeobox	85.6	5.6e-28	114	177	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPtp Q++iL++++++G P k +i++it+eL+++G i+++NV +WFQNr+aR+++kq Aqcoe6G173100.1.p 114 SRQRWTPTPVQLQILDRIFDEGNGFPGKLKIKDITNELTQHGPISETNVSNWFQNRRARSKRKQ 177 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-15	108	180	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.285	111	176	IPR001356	Homeobox domain
SMART	SM00389	1.1E-11	113	180	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-16	113	177	IPR009057	Homeodomain-like
Pfam	PF00046	1.7E-15	115	175	IPR001356	Homeobox domain
CDD	cd00086	1.13E-10	115	177	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MFIPVKNLLK RKGERDQIME WKKEEEEEEK RKQTQLLQVE NTNNTSMLYM KVMTDEQMEL 60 LQKQICIYST ISQQLVEMYK SISSQHHHLS ISGMKLGNQY CDSLMMSTGN KMTSRQRWTP 120 TPVQLQILDR IFDEGNGFPG KLKIKDITNE LTQHGPISET NVSNWFQNRR ARSKRKQMVK 180 APNSAESDIE IEDESLKEKK TNSDGIPSQK TPALKSDKTC LQSFELHPAD SQSNSSNLSG 240 SKAHQISFYE SVLSSSRIDC LMGKMEDPGN FNPYSQGEGY DMIG*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	176	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010270477.1	1e-88	PREDICTED: WUSCHEL-related homeobox 8-like
Refseq	XP_026403444.1	4e-88	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	8e-73	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2G5DT84	1e-140	A0A2G5DT84_AQUCA; Uncharacterized protein
STRING	Aquca_015_00333.1	1e-141	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-54	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Aqcoe6G173100.1.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]