PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G145900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ERF
Protein Properties Length: 173aa    MW: 18932 Da    PI: 5.2555
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G145900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.56.7e-181564255
                AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       +y+GVr +k +g+Wv+e+r+p   g + +r++lg+f t+e+Aa a++ a++ ++g
  Aqcoe6G145900.1.p 15 DYRGVRKRK-WGKWVCEVREP---G-TqTRVWLGSFATPEMAAIAHDVAALFFRG 64
                       69****999.*******9998...3.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.2341572IPR001471AP2/ERF domain
SMARTSM003803.8E-321578IPR001471AP2/ERF domain
PfamPF008477.3E-131564IPR001471AP2/ERF domain
PRINTSPR003679.7E-101627IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-201672IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.1E-301674IPR001471AP2/ERF domain
CDDcd000185.53E-291673No hitNo description
PRINTSPR003679.7E-103854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MDQSTTQFNS AGRGDYRGVR KRKWGKWVCE VREPGTQTRV WLGSFATPEM AAIAHDVAAL  60
FFRGPEAKLN FPEMADKLPR PISSKPNDIR SAAHDAVSRF TTSTGASEIG GSSSNSVPTR  120
VTLSPSEIQA INDTTLDSPM WSELEFGLPD ISPFFTSFEY SDGEQHGSLW NI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-141672663ATERF1
3gcc_A1e-141672663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00227DAPTransfer from AT1G71450Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023894545.17e-54ethylene-responsive transcription factor ERF021-like
SwissprotQ9C9I22e-48ERF21_ARATH; Ethylene-responsive transcription factor ERF021
TrEMBLA0A2G5DSE01e-124A0A2G5DSE0_AQUCA; Uncharacterized protein
STRINGAquca_015_00110.11e-125(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71450.19e-51ERF family protein