PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G140800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 291aa    MW: 32440.1 Da    PI: 6.2663
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G140800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind116.71.4e-36101022103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y+++ed++++++isw+e+g++fvv+++ efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+   +         weF h+ Fkkg+ ++
  Aqcoe6G140800.1.p  10 FLTKTYQLVEDPSTDDVISWNETGTAFVVWKSAEFASNLLPTYFKHNNFSSFVRQLNTYGFRKIVPGR---------WEFMHEFFKKGEIDQ 92 
                        9***************************************************************9988.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+ks+
  Aqcoe6G140800.1.p  93 LREIHRRKST 102
                        *******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.1E-56699IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.0E-37799IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-33799IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004479.2E-321099IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-211033IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-214860IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043404973IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.5E-216173IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009408Biological Processresponse to heat
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MSQRSVPAPF LTKTYQLVED PSTDDVISWN ETGTAFVVWK SAEFASNLLP TYFKHNNFSS  60
FVRQLNTYGF RKIVPGRWEF MHEFFKKGEI DQLREIHRRK STHALTPQVV VAGKSTGRSS  120
SQSNSGDDQR SGSTTSPDTK NNASDETATT GTTHLSNLSD ENEKLRKDNE LLSSELARTK  180
KQCEDLMALL SNRVTVAPDQ TSGVMLEGVD GPSEITDNVV KDNDENKEQE QEEKCLKLFG  240
VWLNEKKTER DVVLGNVGGP SSKKMKMAMD YHAPWMKISS SQGESSKVCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdk_A5e-2461017112Heat shock factor protein 2
5hdk_B5e-2461017112Heat shock factor protein 2
5hdk_C5e-2461017112Heat shock factor protein 2
5hdk_D5e-2461017112Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269874.11e-106PREDICTED: heat shock factor protein HSF24
SwissprotP223351e-93HSF24_SOLPE; Heat shock factor protein HSF24
TrEMBLA0A2G5DRZ50.0A0A2G5DRZ5_AQUCA; Uncharacterized protein
STRINGAquca_015_00059.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.13e-71heat shock factor 4
Publications ? help Back to Top
  1. Scharf KD, et al.
    Three tomato genes code for heat stress transcription factors with a region of remarkable homology to the DNA-binding domain of the yeast HSF.
    EMBO J., 1990. 9(13): p. 4495-501
    [PMID:2148291]