PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G139700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family HSF
Protein Properties Length: 347aa    MW: 39316.9 Da    PI: 7.9237
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G139700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.7e-36251172103
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fk+g+k+l
  Aqcoe6G139700.1.p  25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKRGEKHL 107
                        9*****************************************************************99.........*************** PP

                        XXXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkkse 103
                        l++i+r+k++
  Aqcoe6G139700.1.p 108 LCEIHRRKTS 117
                        *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3817109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-6121114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.22E-3522114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.6E-3225114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-202548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-206375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.3E-207688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KRGEKHLLCE IHRRKTSNHP  120
ICHSPINGVG GPSFFGYPNR GSISPSDSDE QANWCDSPSF SSGCNNNNNN INNNNNNSNN  180
SISALSEDNE RLRRSNTMLM SELAHMRKLY NDIIYFVQNH VRPVTPSNSF PSSLLINPST  240
SPTTLIPPTN TTTMFQKPQN NVLGYYQSSQ PKQVNHQHIN GTSFNSPTHQ ILEESNNTRT  300
KLFGVSLHPK KRLHPDPTSN MENNKARLML SKDDLGLNLM PPSCYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018819829.11e-167PREDICTED: heat stress transcription factor B-4-like
SwissprotQ9C6351e-110HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2G5DS490.0A0A2G5DS49_AQUCA; Uncharacterized protein
STRINGAquca_015_00048.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-108heat shock transcription factor B4