PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G129700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

TALE

Protein Properties

Length: 745aa MW: 81819.3 Da PI: 6.2946

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G129700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.2	3.3e-09	486	523	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gLt +qV++WF N R + Aqcoe6G129700.1.p 486 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 523 664459******************************88 PP
2	BELL	126.9	7.2e-41	348	419	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq+lq+k +kLls+l+eVd+rY+qy++q+q+v+ssF+++ag+g+akpYt+lAl +iSrhFrcL+dai++qi Aqcoe6G129700.1.p 348 ERQDLQNKLTKLLSMLDEVDRRYRQYYHQMQIVVSSFDVIAGCGAAKPYTALALETISRHFRCLRDAISGQI 419 799********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	6.0E-63	265	417	IPR006563	POX domain
Pfam	PF07526	2.0E-49	271	416	IPR006563	POX domain
PROSITE profile	PS50071	12.163	464	527	IPR001356	Homeobox domain
CDD	cd00086	5.16E-13	467	528	No hit	No description
SMART	SM00389	1.0E-9	467	531	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.82E-17	468	534	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.1E-29	470	533	IPR009057	Homeodomain-like
Pfam	PF05920	5.1E-18	484	523	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 745 aa Download sequence Send to blast
MATYFPSSSN QRNIVPTMYV RDSTATEYAE ASGLPNHMMM YMNYSSAGSY SDTIAGNSQQ 60 HQNCVDLPSV GASELSPSQQ GMLSNLVGSH TGDHVYNSWR DGRNEMFMQP IGGHTTIQSL 120 GAQISGARDD LVRDTVNEDP HQGLRPQLGV LDGGQNMQGQ GLSLSLSTQF SSAVPVPSFQ 180 FRHPNAGLSS FLASHPTISG EGGSGSGTCR DEENSPNKQS RNADYYQPGF QGGNHDAIKQ 240 EALNNLQGSL DPKQMHLVTS PYGLPGFAST IPNSKYLKAT QQLLDEVVNV RKALKQHDAG 300 KLQGVGSKSF RETDAGSKDS TTAPSTSGIP TDSQEQTSNS TVELSPGERQ DLQNKLTKLL 360 SMLDEVDRRY RQYYHQMQIV VSSFDVIAGC GAAKPYTALA LETISRHFRC LRDAISGQIK 420 ATRKSLGEQD TTGNSKGGGI SRLRFVDQQL RQQRALQQLG MMQQHAWRPQ RGLPESSVSI 480 LRAWLFEHFL HPYPKDSDKI MLARQTGLTR SQVSNWFINA RVRLWKPMVE EMYKEEFGDI 540 EMDSISSSDN ASKSARDDTK ISEDGREELQ QNANPSATER CQPSQFHDSK GNSVPDVDMS 600 GTLTSSSYQN RLQSEDDMGY MGMRLRGNQN HNVDHSNLLH DTLVQSDGSG TGRFISADAY 660 HHMAEMGRFG SGDGVSLTLG LQHRDGSGMP MSGGTHNNFV TMRGDEMYTA ATSLGPDTTD 720 YDCMDPEDRR HRFSSSHMLH DFVA*

Sequence ? help Back to Top

Protein Sequence Length: 745 aa Download sequence Send to blast

MATYFPSSSN QRNIVPTMYV RDSTATEYAE ASGLPNHMMM YMNYSSAGSY SDTIAGNSQQ  60
HQNCVDLPSV GASELSPSQQ GMLSNLVGSH TGDHVYNSWR DGRNEMFMQP IGGHTTIQSL  120
GAQISGARDD LVRDTVNEDP HQGLRPQLGV LDGGQNMQGQ GLSLSLSTQF SSAVPVPSFQ  180
FRHPNAGLSS FLASHPTISG EGGSGSGTCR DEENSPNKQS RNADYYQPGF QGGNHDAIKQ  240
EALNNLQGSL DPKQMHLVTS PYGLPGFAST IPNSKYLKAT QQLLDEVVNV RKALKQHDAG  300
KLQGVGSKSF RETDAGSKDS TTAPSTSGIP TDSQEQTSNS TVELSPGERQ DLQNKLTKLL  360
SMLDEVDRRY RQYYHQMQIV VSSFDVIAGC GAAKPYTALA LETISRHFRC LRDAISGQIK  420
ATRKSLGEQD TTGNSKGGGI SRLRFVDQQL RQQRALQQLG MMQQHAWRPQ RGLPESSVSI  480
LRAWLFEHFL HPYPKDSDKI MLARQTGLTR SQVSNWFINA RVRLWKPMVE EMYKEEFGDI  540
EMDSISSSDN ASKSARDDTK ISEDGREELQ QNANPSATER CQPSQFHDSK GNSVPDVDMS  600
GTLTSSSYQN RLQSEDDMGY MGMRLRGNQN HNVDHSNLLH DTLVQSDGSG TGRFISADAY  660
HHMAEMGRFG SGDGVSLTLG LQHRDGSGMP MSGGTHNNFV TMRGDEMYTA ATSLGPDTTD  720
YDCMDPEDRR HRFSSSHMLH DFVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-16	473	530	1	58	Homeobox protein Meis1
4xrs_B	1e-16	473	530	1	58	Homeobox protein Meis1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010254698.1	0.0	PREDICTED: BEL1-like homeodomain protein 6
Swissprot	O65685	1e-131	BLH6_ARATH; BEL1-like homeodomain protein 6
TrEMBL	A0A2G5EAK5	0.0	A0A2G5EAK5_AQUCA; Uncharacterized protein
STRING	Aquca_010_00581.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34610.2	1e-119	BEL1-like homeodomain 6

Link Out ? help Back to Top
Phytozome	Aqcoe6G129700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Cassan-Wang H, et al. Identification of novel transcription factors regulating secondary cell wall formation in Arabidopsis. Front Plant Sci, 2013. 4: p. 189 [PMID:23781226]