PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G127300.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

bHLH

Protein Properties

Length: 390aa MW: 43642.7 Da PI: 8.594

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G127300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.8	5.3e-05	231	269	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Aqcoe6G127300.2.p 231 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 269 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.909	219	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.42E-5	229	273	No hit	No description
SuperFamily	SSF47459	5.37E-11	229	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.9E-9	233	276	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MIQDLGYPNW VTNNFTNQSA HDLHLAKIKE ELSESAISCS SSSPEDYHLP STSYIRHDHR 60 GDIHDLNENI FLKNFSSNCQ LNELQGGSLY SNSSQSTPSF GGLATPNRGN FSQIFPTANI 120 SNPNSSFLSS SGMNLQVLDL LTSTNFSGGF NHQLAHNNLG LFKEAPSFSH DHLKEPSHWL 180 TNSHNKVSSF INGVTETKRS NSSVSEAKAS HTASKKPRLE SRSSLAPFKV RKEKLGDRIA 240 ALQQLVAPFG KTDTASVLME AIGYIKFLQD QVETLSVPYM KPSRNNTRRS IQEGSMEDVD 300 EEQKRDLRSR GLCLVPLSCM SYITNDNIEF FTHKKMDHLI TSINNNNNKS TKRSNNLLHS 360 SFFFFFFFTT TTTSKYNFLP LLVGGWYKT*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MIQDLGYPNW VTNNFTNQSA HDLHLAKIKE ELSESAISCS SSSPEDYHLP STSYIRHDHR  60
GDIHDLNENI FLKNFSSNCQ LNELQGGSLY SNSSQSTPSF GGLATPNRGN FSQIFPTANI  120
SNPNSSFLSS SGMNLQVLDL LTSTNFSGGF NHQLAHNNLG LFKEAPSFSH DHLKEPSHWL  180
TNSHNKVSSF INGVTETKRS NSSVSEAKAS HTASKKPRLE SRSSLAPFKV RKEKLGDRIA  240
ALQQLVAPFG KTDTASVLME AIGYIKFLQD QVETLSVPYM KPSRNNTRRS IQEGSMEDVD  300
EEQKRDLRSR GLCLVPLSCM SYITNDNIEF FTHKKMDHLI TSINNNNNKS TKRSNNLLHS  360
SFFFFFFFTT TTTSKYNFLP LLVGGWYKT*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002281118.2	1e-121	PREDICTED: transcription factor bHLH110 isoform X2
TrEMBL	A0A2G5EAH3	0.0	A0A2G5EAH3_AQUCA; Uncharacterized protein
STRING	Aquca_010_00556.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aqcoe6G127300.2.p