PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G101300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 286aa MW: 32390.3 Da PI: 9.757 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.2 | 3e-18 | 34 | 115 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++lvlp kf+++hg++ s +tl+ ++g +W++kl +k +g++ l +GWk+Fv+ + + +g +++F++dg+s+f +v +++ Aqcoe6G101300.4.p 34 IADQQLVLPTKFVTKHGNE--FSDNVTLKVPNGSVWTIKL--NKDDGKICLCAGWKDFVEYHSIHAGHVLIFRYDGKSCF--YVIICD 115 56789***********966..7889***************..**********************************9***..999887 PP | |||||||
2 | B3 | 52.1 | 1.2e-16 | 180 | 277 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+ +++++l+++ + +p +f++++ ++k + ltle ++g ++ +v++ + + ++ ++kG ++F +n+++ gD++vF+l+++++ Aqcoe6G101300.4.p 180 FFKISMNASYLSRKFMNIPVEFCKNY-LPK-GLESLTLEVSNGrKKCRVRCLPvCSQNRGLRMSKGLSSFIAENKIQIGDICVFELINKTDV 269 99*********************888.333.33479999988879999**954577777799*************************99999 PP ..EEEEE- CS B3 91 elvvkvfr 98 l+v++f+ Aqcoe6G101300.4.p 270 ALKVHIFS 277 9*****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 7.7E-24 | 19 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.55E-23 | 21 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.578 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.97E-20 | 24 | 115 | No hit | No description |
SMART | SM01019 | 2.0E-16 | 25 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 33 | 115 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.96E-17 | 174 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-19 | 174 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.49E-16 | 180 | 277 | No hit | No description |
PROSITE profile | PS50863 | 9.037 | 180 | 279 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.9E-9 | 180 | 279 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.8E-15 | 180 | 277 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MSRATSKQRG AEQFSPPVNK RKTSFFKIIH GNIIADQQLV LPTKFVTKHG NEFSDNVTLK 60 VPNGSVWTIK LNKDDGKICL CAGWKDFVEY HSIHAGHVLI FRYDGKSCFY VIICDMTTVE 120 INYPSETVNK LEKATRAGKI LTSRQNLGSK TELEDDDDVQ ILNVRANRDD ADTFKSRYPF 180 FKISMNASYL SRKFMNIPVE FCKNYLPKGL ESLTLEVSNG RKKCRVRCLP VCSQNRGLRM 240 SKGLSSFIAE NKIQIGDICV FELINKTDVA LKVHIFSQLK DQRSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5E9H9 | 0.0 | A0A2G5E9H9_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_010_00343.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-24 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G101300.4.p |