PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G101300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 243aa MW: 27599.8 Da PI: 9.9036 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.7 | 2.2e-18 | 34 | 115 | 11 | 98 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 + ++lvlp kf+++hg++ s +tl+ ++g +W++kl +k +g++ l +GWk+Fv+ + + +g +++F++dg+s+f +v +++ Aqcoe6G101300.2.p 34 IADQQLVLPTKFVTKHGNE--FSDNVTLKVPNGSVWTIKL--NKDDGKICLCAGWKDFVEYHSIHAGHVLIFRYDGKSCF--YVIICD 115 56789***********966..7889***************..**********************************9***..999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.4E-24 | 19 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.8E-23 | 21 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.578 | 24 | 117 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.82E-20 | 24 | 115 | No hit | No description |
SMART | SM01019 | 2.0E-16 | 25 | 117 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-15 | 33 | 115 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 7.5E-7 | 174 | 229 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-6 | 174 | 227 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MSRATSKQRG AEQFSPPVNK RKTSFFKIIH GNIIADQQLV LPTKFVTKHG NEFSDNVTLK 60 VPNGSVWTIK LNKDDGKICL CAGWKDFVEY HSIHAGHVLI FRYDGKSCFY VIICDMTTVE 120 INYPSETVNK LEKATRAGKI LTSRQNLGSK TELEDDDDVQ ILNVRANRDD ADTFKSRYPF 180 FKISMNASYL SRKFMNIPVE FCKNYLPKGL ESLTLEVSNG RKKCRVRCLP VCSQNRGLRM 240 RG* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2G5EA27 | 0.0 | A0A2G5EA27_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_010_00343.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-25 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G101300.2.p |