PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G101300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 286aa    MW: 32390.3 Da    PI: 9.757
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G101300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.23e-18341151198
                        HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                         + ++lvlp kf+++hg++   s  +tl+ ++g +W++kl  +k +g++ l +GWk+Fv+ + + +g +++F++dg+s+f  +v +++
  Aqcoe6G101300.1.p  34 IADQQLVLPTKFVTKHGNE--FSDNVTLKVPNGSVWTIKL--NKDDGKICLCAGWKDFVEYHSIHAGHVLIFRYDGKSCF--YVIICD 115
                        56789***********966..7889***************..**********************************9***..999887 PP
2B352.11.2e-16180277198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        ffk+ +++++l+++ + +p +f++++ ++k +   ltle ++g ++ +v++   + + ++  ++kG ++F  +n+++ gD++vF+l+++++ 
  Aqcoe6G101300.1.p 180 FFKISMNASYLSRKFMNIPVEFCKNY-LPK-GLESLTLEVSNGrKKCRVRCLPvCSQNRGLRMSKGLSSFIAENKIQIGDICVFELINKTDV 269
                        99*********************888.333.33479999988879999**954577777799*************************99999 PP

                        ..EEEEE- CS
                 B3  91 elvvkvfr 98 
                         l+v++f+
  Aqcoe6G101300.1.p 270 ALKVHIFS 277
                        9*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.7E-2419116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.55E-2321115IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.57824117IPR003340B3 DNA binding domain
CDDcd100172.97E-2024115No hitNo description
SMARTSM010192.0E-1625117IPR003340B3 DNA binding domain
PfamPF023621.9E-1533115IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-17174277IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-19174277IPR015300DNA-binding pseudobarrel domain
CDDcd100172.49E-16180277No hitNo description
PROSITE profilePS508639.037180279IPR003340B3 DNA binding domain
SMARTSM010193.9E-9180279IPR003340B3 DNA binding domain
PfamPF023622.8E-15180277IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MSRATSKQRG AEQFSPPVNK RKTSFFKIIH GNIIADQQLV LPTKFVTKHG NEFSDNVTLK  60
VPNGSVWTIK LNKDDGKICL CAGWKDFVEY HSIHAGHVLI FRYDGKSCFY VIICDMTTVE  120
INYPSETVNK LEKATRAGKI LTSRQNLGSK TELEDDDDVQ ILNVRANRDD ADTFKSRYPF  180
FKISMNASYL SRKFMNIPVE FCKNYLPKGL ESLTLEVSNG RKKCRVRCLP VCSQNRGLRM  240
SKGLSSFIAE NKIQIGDICV FELINKTDVA LKVHIFSQLK DQRSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5E9H90.0A0A2G5E9H9_AQUCA; Uncharacterized protein
STRINGAquca_010_00343.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-24B3 family protein