PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G101200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | B3 | ||||||||
Protein Properties | Length: 445aa MW: 51226.2 Da PI: 9.8753 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 52.2 | 1.1e-16 | 11 | 86 | 17 | 98 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 lp f+++++++ s ++tl+ ++g++W++kl rk gr++l +GWkeFv+ + +++g +++F++dg+s+f +v +++ Aqcoe6G101200.2.p 11 DLPIMFVKKYEND--FSGDVTLKVPTGNVWNMKL--RKVNGRTYLCDGWKEFVDHHSVCAGYVLTFRYDGNSSF--YVIICD 86 58999*****877..6779***************..99999*******************************99..999887 PP | |||||||
2 | B3 | 59 | 8.3e-19 | 166 | 262 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+ v+ ps+v +++l +p +f+++h gk+ +++t+ + d ++ r W+ ++iy +++ + Wk+F+k+n+L+e+D+++F+l++ ++ Aqcoe6G101200.2.p 166 FVLVMQPSSVEGRCILNVPGSFLKKHIGKESCDITMFVSDdSHERIWRTRCIYyDNNVA----KFVWKKFAKDNDLRENDVCMFELSQMKSV 253 788999********************99999*******997888*******88555554....455********************998999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +++v++fr+ Aqcoe6G101200.2.p 254 TFKVSIFRE 262 9*****996 PP | |||||||
3 | B3 | 52 | 1.3e-16 | 357 | 441 | 4 | 94 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 +l + + g+l lp +f++++ k+e+ +++ d++gr+W v++ + +s++y l +GW+ v +LkegD++ F+l++ ++f l++ Aqcoe6G101200.2.p 357 KL-SRTYVHGGLLQLPSSFIRKYLPKTES--SVRIVDSKGRTWYVRY--NLNSQGY-LYQGWNTVVLKSNLKEGDVCAFELIDMENFILRL 441 34.444555678***********544444..6***************..9999997.566*********************9878885555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 13.296 | 1 | 88 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-10 | 5 | 88 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.73E-21 | 11 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.1E-19 | 12 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.73E-16 | 12 | 86 | No hit | No description |
Pfam | PF02362 | 4.0E-14 | 12 | 86 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.1E-21 | 158 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-20 | 160 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.98E-19 | 164 | 261 | No hit | No description |
SMART | SM01019 | 8.3E-13 | 166 | 263 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.63 | 166 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-15 | 166 | 262 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.1E-18 | 347 | 437 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.86E-18 | 349 | 438 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.95E-12 | 352 | 433 | No hit | No description |
PROSITE profile | PS50863 | 13.62 | 353 | 444 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.1E-8 | 353 | 442 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-15 | 353 | 440 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 445 aa Download sequence Send to blast |
MVMQYMKYST DLPIMFVKKY ENDFSGDVTL KVPTGNVWNM KLRKVNGRTY LCDGWKEFVD 60 HHSVCAGYVL TFRYDGNSSF YVIICDMTTA EIEYPSKKVK LEDPAHGRET LVPGKNGVEK 120 LNGDKSTHKL TAQLGELSVK NGQSRKLMAK ERIKAMMPSK PKNPYFVLVM QPSSVEGRCI 180 LNVPGSFLKK HIGKESCDIT MFVSDDSHER IWRTRCIYYD NNVAKFVWKK FAKDNDLREN 240 DVCMFELSQM KSVTFKVSIF REVEDVTPRV LRDTSKMQVF NQSECRTAKK KKVMNNGKVE 300 ALEVPSHGFV RGDGYGYPSK EESKGKNVAN KFLDRTVTRT RPMPFSFKSD YHFFIIKLSR 360 TYVHGGLLQL PSSFIRKYLP KTESSVRIVD SKGRTWYVRY NLNSQGYLYQ GWNTVVLKSN 420 LKEGDVCAFE LIDMENFILR LSVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4i1k_A | 5e-15 | 141 | 266 | 21 | 146 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-15 | 141 | 266 | 21 | 146 | B3 domain-containing transcription factor VRN1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 1e-36 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G101200.2.p |