PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G099100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Dof

Protein Properties

Length: 175aa MW: 19059.6 Da PI: 9.4233

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G099100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.6	1.1e-37	21	78	2	59
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 ++++l+cprC+s+ntkfCyynny+ sqPryfCkaCrryWt+GGalrn+P+Ggg+rk+ Aqcoe6G099100.1.p 21 HQEHLPCPRCESNNTKFCYYNNYNFSQPRYFCKACRRYWTQGGALRNIPIGGGTRKSS 78 57899***************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-18	9	72	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-32	23	78	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.63	25	79	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	27	63	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0000976	Molecular Function	transcription regulatory region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MPNKKSQQHG GSGALPPPPP HQEHLPCPRC ESNNTKFCYY NNYNFSQPRY FCKACRRYWT 60 QGGALRNIPI GGGTRKSSCK RTRTTSPSNT TSITQTTMSV PPMCNLPGSF TSLLNSQVPE 120 IMGLGFDNFG LGIGGGVWSS LMNLSDCAGN NNMWQLGGNN CITWSDSTPR KCLK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00593	DAP	Transfer from AT5G66940	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010263782.1	4e-43	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q9FGD6	2e-36	DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBL	A0A2G5E9H1	1e-125	A0A2G5E9H1_AQUCA; Uncharacterized protein
STRING	Aquca_010_00327.1	1e-126	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	6e-25	OBF binding protein 1

Link Out ? help Back to Top
Phytozome	Aqcoe6G099100.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]