PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G090000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 286aa    MW: 30962.6 Da    PI: 6.0517
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G090000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.71.2e-16189225135
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C++Cgt++  Tp++Rrgp g++tLCnaCGl ++ kg+
  Aqcoe6G090000.1.p 189 CTHCGTSSrfTPMMRRGPAGPRTLCNACGLTWANKGK 225
                        *********************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.5334984IPR010399Tify domain
SMARTSM009793.9E-84984IPR010399Tify domain
PfamPF062005.0E-115583IPR010399Tify domain
PROSITE profilePS5101713.027116158IPR010402CCT domain
PfamPF062035.5E-15116158IPR010402CCT domain
SMARTSM004011.5E-11183236IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.66E-12186233No hitNo description
Gene3DG3DSA:3.30.50.102.7E-16188230IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.89E-18188239No hitNo description
PROSITE profilePS501149.868189231IPR000679Zinc finger, GATA-type
PfamPF003201.5E-14189225IPR000679Zinc finger, GATA-type
PROSITE patternPS003440189216IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPESNTLNQQ LYGVHHTVEG SGINGNMDMM DGSDDIPSDS GYPSIANQLG EGMDQLSISF  60
QGEVFVYDSV PPEKVQAVLL LLGGYELPSG VPNVTVASQK RRGSGDLMGG LNVPHRAASL  120
IRFREKRKER NYDKKIRYNV RKEVALRMQR RKGQFMSSKV RPEGLASASS SWSAEGNPGR  180
DESLPEIICT HCGTSSRFTP MMRRGPAGPR TLCNACGLTW ANKGKLRPVT KGNVGGQKAV  240
EVHFAVQSAA TQDEANDTNA DDDEKGSPEL DMITMTNGDN DDNDV*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5756188e-99AY575618.1 Aquilegia chrysantha clone B10 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021291024.12e-87GATA transcription factor 28-like
SwissprotQ8H1G07e-69GAT28_ARATH; GATA transcription factor 28
TrEMBLA0A2G5E9190.0A0A2G5E919_AQUCA; Uncharacterized protein
STRINGAquca_010_00250.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.22e-70ZIM-like 1