PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G089900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 407aa    MW: 44281.7 Da    PI: 4.7361
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G089900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA42.77.5e-14198233134
               GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 
                        C++Cg  +  Tp +++gp g+++LCnaCGl++r kg
  Aqcoe6G089900.1.p 198 CQHCGIAEksTPVMHSGPAGPRSLCNACGLMWRNKG 233
                        *****88888***********************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009794.7E-95590IPR010399Tify domain
PROSITE profilePS5132012.4435590IPR010399Tify domain
PfamPF062004.2E-96189IPR010399Tify domain
PfamPF094251.2E-5122140IPR018467CO/COL/TOC1, conserved site
SMARTSM004012.0E-7192245IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.3E-12197239IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.59E-12197239No hitNo description
SuperFamilySSF577164.09E-9197246No hitNo description
PROSITE patternPS003440198225IPR000679Zinc finger, GATA-type
PfamPF003209.2E-12198233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MAAMNRKRLQ RQSTRPSRYQ NNGDFMIDYD SVNGGNDEYK DDEGNDQEIS QRKQSSSLKH  60
ELTVSFAGQV YVFKEVSPEK VQAVLLLLGG REITTTGPTA DSPFPINRGV DEALQHSNHS  120
RRIASLARFR EKRKERCFEK KVQSSKEVAQ RMQHKNGQIL SLSETKTKGL AGSSSWASPQ  180
SSYQDISTPA AEIVDSKCQH CGIAEKSTPV MHSGPAGPRS LCNACGLMWR NKGPLRDLTV  240
DRNHPSSELN EPEVSGETTA ITMEAENLTS NDKQETSSET NTSIVGGDSL AAKDEQVGTE  300
DMRPSSLEIG NCFAGSYEQR TAEDLTMSVP EAIDNSAASF DEQSAQDSGL VAQSLWGDFS  360
AISSSNFWDL QGTNNDLAQD STDIGIPSIL FHQIVANDAF LGSGLL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019055728.12e-82PREDICTED: GATA transcription factor 28-like isoform X2
TrEMBLA0A2G5E9020.0A0A2G5E902_AQUCA; Uncharacterized protein
STRINGAquca_010_00249.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-44ZIM-like 1