PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G075100.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | bHLH | ||||||||
Protein Properties | Length: 375aa MW: 41753.7 Da PI: 5.0849 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.3 | 1.2e-12 | 163 | 214 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h +Er+RR+++N+ ++ Lr+l+P + + ++ + a+i A++++k+L+ Aqcoe6G075100.1.p 163 QRMTHIVVERNRRKQMNEYLAVLRSLMPAS---YVQRSDQASIIGGAINFVKELE 214 79****************************...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 7.07E-17 | 161 | 229 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.69E-12 | 161 | 218 | No hit | No description |
PROSITE profile | PS50888 | 15.199 | 162 | 213 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.9E-10 | 163 | 214 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.4E-14 | 163 | 226 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.0E-9 | 168 | 219 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 375 aa Download sequence Send to blast |
MCIDREREEI ERGKEKEMAL ETVVYPNNLF SSYVCKDLYS LSSTSSVGVG NVGSVGGGGI 60 TSYDFALKEE EEQSGCCYDH EFDEFFGKNV SYQDLLFNNH LIPSFNLVQN VSECHTNSSD 120 GVCDESSLLN EEPLANTTST STNSRRKRRR TRINKNKEEV ENQRMTHIVV ERNRRKQMNE 180 YLAVLRSLMP ASYVQRSDQA SIIGGAINFV KELEQFLQSL EAQKQIKEQP EAATATTTTT 240 PFADFFAYPQ YSSSCNQNNN SSSNATKESM AENKSSIADI EVTMVESHAN LKILSKKRPK 300 QILKMVVGFQ NLHLSVLHLN VTTVEQLVLY SFSVKVEEDC QLKSVDGIAS AVHQMLQRIE 360 EEGVAAAATS AALS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 149 | RKRRR |
2 | 145 | 150 | RKRRRT |
3 | 163 | 174 | RMTHIVVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010266731.1 | 1e-126 | PREDICTED: transcription factor bHLH94-like | ||||
TrEMBL | A0A2G5E8B8 | 0.0 | A0A2G5E8B8_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_010_00112.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72210.1 | 1e-69 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G075100.1.p |