PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe6G066000.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

Nin-like

Protein Properties

Length: 972aa MW: 107819 Da PI: 5.7465

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe6G066000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.5	5.7e-28	592	643	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l++yF+ ++kdAAk+Lgvc+T++KriCR++GI+RWP+Rki+++ Aqcoe6G066000.2.p 592 AEKSISLDVLQQYFAVSLKDAAKSLGVCPTTMKRICRNHGISRWPSRKINKV 643 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.348	582	663	IPR003035	RWP-RK domain
Pfam	PF02042	2.5E-25	596	643	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.09E-20	871	960	No hit	No description
SMART	SM00666	2.3E-19	876	958	IPR000270	PB1 domain
PROSITE profile	PS51745	19.398	876	958	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	9.1E-20	877	957	No hit	No description
Pfam	PF00564	9.7E-15	878	957	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0010118	Biological Process	stomatal movement
GO:0010167	Biological Process	response to nitrate
GO:0042128	Biological Process	nitrate assimilation
GO:0005634	Cellular Component	nucleus
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 972 aa Download sequence Send to blast
MYEAEEENSS IDSKTSSTLP LSSTVEQQYS SLMDFDFDID SSWPFDRNIF TSNPSSPNYL 60 LSLASSPLRN PTFSEHQSFP NWVFLDEDDE KSSFKANSLS NCNTINGNSV RDKNKRKFLP 120 ASVGMLPVEM QDGSSVIKEK MLQALQHFKE SMDQHILAQI WAPVKKGDHY VLTTSGQPFV 180 LDPQSNGLLQ YRTVSLMYMF SLEGESDGEL GLPGRVFRQK LPEWTPDVQY YSSKEYPRLN 240 HALCYNVRGT LALPVFEPSK QSCLGVIELI MMSQKINYAP EVDKVCKALE AVNLKSSDSL 300 DHPSFQICND GRQYALAEIL EILTVVCETH RLPLAQTWVP CQHRKILADG GGVEKSCMSF 360 DGSCMGQVCM STTDVAFYVV DAHMWGFRDA CSEHHLQKGQ GVAGRAFSSK GSCFSMDITQ 420 FSKTQYPLAH YAQMFGLSSC FAICLCSTHT GTDDYILEFF LPPGIMDLSE QLTFVNSVLA 480 TMKHHCRSLK VASKDELGEE KPVEIIETST DKNLDLRFKS TQTSSQIKSP GEPNSLSNQG 540 CTQKTDLFEK QSMVEMGDPR NGDNAVSMST NHTTLSGNKG MKKTLEKKKG KAEKSISLDV 600 LQQYFAVSLK DAAKSLGVCP TTMKRICRNH GISRWPSRKI NKVNHSISKL NRVIESVQGA 660 ERAFDLTSFN TSPGPIFRGK ETNLSTRTEP ETYDGKIGIK ILEMDDLSTH QEQFLNPGGL 720 HSELGKGSSF MKIRSGSGEE STETPTSHGS CQGSPINETT ITNDVFISSV QGPGESNRSF 780 LGVKPQPSEQ LNIFSSHSTP EAPFMTQQPP LGGMLIEDAG SSKDLRKLSN LVSELEEWEL 840 ESNSKNHVCP GNVPPEGMNP NGHTMPHITA AEDTKILTFK VNYQDDIIRF RLPVTSGMHE 900 LMGEVAKRFK LEVGTFSMKY LDDDHEWVSL ACDTDWQECM DNSGLSGKRV TRLMVHEIIA 960 DLGSSCESLR G*

Sequence ? help Back to Top

Protein Sequence Length: 972 aa Download sequence Send to blast

MYEAEEENSS IDSKTSSTLP LSSTVEQQYS SLMDFDFDID SSWPFDRNIF TSNPSSPNYL  60
LSLASSPLRN PTFSEHQSFP NWVFLDEDDE KSSFKANSLS NCNTINGNSV RDKNKRKFLP  120
ASVGMLPVEM QDGSSVIKEK MLQALQHFKE SMDQHILAQI WAPVKKGDHY VLTTSGQPFV  180
LDPQSNGLLQ YRTVSLMYMF SLEGESDGEL GLPGRVFRQK LPEWTPDVQY YSSKEYPRLN  240
HALCYNVRGT LALPVFEPSK QSCLGVIELI MMSQKINYAP EVDKVCKALE AVNLKSSDSL  300
DHPSFQICND GRQYALAEIL EILTVVCETH RLPLAQTWVP CQHRKILADG GGVEKSCMSF  360
DGSCMGQVCM STTDVAFYVV DAHMWGFRDA CSEHHLQKGQ GVAGRAFSSK GSCFSMDITQ  420
FSKTQYPLAH YAQMFGLSSC FAICLCSTHT GTDDYILEFF LPPGIMDLSE QLTFVNSVLA  480
TMKHHCRSLK VASKDELGEE KPVEIIETST DKNLDLRFKS TQTSSQIKSP GEPNSLSNQG  540
CTQKTDLFEK QSMVEMGDPR NGDNAVSMST NHTTLSGNKG MKKTLEKKKG KAEKSISLDV  600
LQQYFAVSLK DAAKSLGVCP TTMKRICRNH GISRWPSRKI NKVNHSISKL NRVIESVQGA  660
ERAFDLTSFN TSPGPIFRGK ETNLSTRTEP ETYDGKIGIK ILEMDDLSTH QEQFLNPGGL  720
HSELGKGSSF MKIRSGSGEE STETPTSHGS CQGSPINETT ITNDVFISSV QGPGESNRSF  780
LGVKPQPSEQ LNIFSSHSTP EAPFMTQQPP LGGMLIEDAG SSKDLRKLSN LVSELEEWEL  840
ESNSKNHVCP GNVPPEGMNP NGHTMPHITA AEDTKILTFK VNYQDDIIRF RLPVTSGMHE  900
LMGEVAKRFK LEVGTFSMKY LDDDHEWVSL ACDTDWQECM DNSGLSGKRV TRLMVHEIIA  960
DLGSSCESLR G*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in regulation of nitrate assimilation and in transduction of the nitrate signal. {ECO:0000269\|PubMed:18826430}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00449	DAP	Transfer from AT4G24020	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not regulated by the N source or by nitrate. {ECO:0000269\|PubMed:18826430}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010267558.1	0.0	PREDICTED: protein NLP6-like isoform X2
Swissprot	Q84TH9	0.0	NLP7_ARATH; Protein NLP7
TrEMBL	A0A2G5E7U0	0.0	A0A2G5E7U0_AQUCA; Uncharacterized protein
STRING	Aquca_010_00024.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	0.0	NIN like protein 7

Link Out ? help Back to Top
Phytozome	Aqcoe6G066000.2.p

Publications ? help Back to Top
Xu N, et al. The Arabidopsis NRG2 Protein Mediates Nitrate Signaling and Interacts with and Regulates Key Nitrate Regulators. Plant Cell, 2016. 28(2): p. 485-504 [PMID:26744214] Karve R,Suárez-Román F,Iyer-Pascuzzi AS The Transcription Factor NIN-LIKE PROTEIN7 Controls Border-Like Cell Release. Plant Physiol., 2016. 171(3): p. 2101-11 [PMID:27221617] Yu LH, et al. Overexpression of Arabidopsis NLP7 improves plant growth under both nitrogen-limiting and -sufficient conditions by enhancing nitrogen and carbon assimilation. Sci Rep, 2016. 6: p. 27795 [PMID:27293103] Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465] Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Liu KH, et al. Discovery of nitrate-CPK-NLP signalling in central nutrient-growth networks. Nature, 2017. 545(7654): p. 311-316 [PMID:28489820] Li Z, et al. The Arabidopsis CPSF30-L gene plays an essential role in nitrate signaling and regulates the nitrate transceptor gene NRT1.1. New Phytol., 2017. 216(4): p. 1205-1222 [PMID:28850721] Cao H, et al. Overexpression of the Maize ZmNLP6 and ZmNLP8 Can Complement the Arabidopsis Nitrate Regulatory Mutant nlp7 by Restoring Nitrate Signaling and Assimilation. Front Plant Sci, 2017. 8: p. 1703 [PMID:29051766] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692] Karve RA,Iyer-Pascuzzi AS Further insights into the role of NIN-LIKE PROTEIN 7 (NLP7) in root cap cell release. Plant Signal Behav, 2018. 13(1): p. e1414122 [PMID:29215953] Zhao L, et al. The Arabidopsis NLP7 gene regulates nitrate signaling via NRT1.1-dependent pathway in the presence of ammonium. Sci Rep, 2018. 8(1): p. 1487 [PMID:29367694]