PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G064400.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 359aa    MW: 39970.1 Da    PI: 7.1918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G064400.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.4e-11182229355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L   ++Y+k+Lq
  Aqcoe6G064400.2.p 182 QDHIIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDSIKYLKQLQ 229
                        5699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-16179246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.301179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-9183229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-16183241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.83E-12184233No hitNo description
SMARTSM003532.7E-13185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516719.553289358IPR002912ACT domain
CDDcd021160.00484290347No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MDMSHWLSEM GMEDSSFNHQ YQMNSLSDFA PQQLAAAFGE DFRHSFSSES FSSYPTFNPC  60
SNATTITHSS LEASQTCFER PAKQLKTSNS WESCTTEQIS VPEASSPNML SFGNSSSPTS  120
HQKFYGGAIK PKDEVVSPTN KSCSSEPRIS HGAYVNQSYA PKACQGNKRV NTPSTKPPSY  180
TQDHIIAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD SIKYLKQLQE KVKILEEQTS  240
KKTMESVVSV RKFQLLSDDD TSSTDENFIK CSDEPFPEIE ARVSDKNVLI RIHCEKRKGV  300
LVKTLAVIEQ LNLSVLNSNS TPFGTSTLDI TVIAEMDEEF NMTVKDLVKN LRSAILRM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-13183238863Transcription factor MYC2
5gnj_B7e-13183238863Transcription factor MYC2
5gnj_E7e-13183238863Transcription factor MYC2
5gnj_F7e-13183238863Transcription factor MYC2
5gnj_G7e-13183238863Transcription factor MYC2
5gnj_I7e-13183238863Transcription factor MYC2
5gnj_M7e-13183238863Transcription factor MYC2
5gnj_N7e-13183238863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271548.11e-128PREDICTED: transcription factor bHLH18-like
RefseqXP_019055013.11e-128PREDICTED: transcription factor bHLH18-like
TrEMBLA0A2G5E7X00.0A0A2G5E7X0_AQUCA; Uncharacterized protein
STRINGAquca_010_00012.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-58bHLH family protein