PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G058700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 340aa    MW: 38690.5 Da    PI: 4.968
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G058700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF892.4e-28958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l  +s
  Aqcoe6G058700.1.p  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 58
                       79********************************************9997 PP
2K-box30.21.8e-11110180979
              K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                        + +++ e+lqqe+++ +++i++ ++++R++  + L+  s+ eL + e+qL + l+++ ++Kn ll ++++ 
  Aqcoe6G058700.1.p 110 AVNSHVEQLQQEITRYQQQIQMTEEQIRNFEPDLLKVTSIDELDSCEKQLVEVLTRVGQRKNFLLSNHLSS 180
                        567899************************************************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.7E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.927161IPR002100Transcription factor, MADS-box
CDDcd002654.46E-38275No hitNo description
SuperFamilySSF554554.84E-30281IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003196.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.4E-8113187IPR002487Transcription factor, K-box
PROSITE profilePS512977.296115195IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MGRVKLQIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGK  60
RRIEDVLTRY INLPDHDRGG TIQNRDYLIR TLKKLKTESD MALQIANPTA VNSHVEQLQQ  120
EITRYQQQIQ MTEEQIRNFE PDLLKVTSID ELDSCEKQLV EVLTRVGQRK NFLLSNHLSS  180
YDPSLQMFMD SQEGMATSTE NKDVNWFPES APNQNQIFVG PNSLIPLRDS SMPMYDSLSQ  240
TTTLNVDPRN IGPCHISNQN DQGLPPWHQV YTTSTELLNA FVPSGPFQLF QNEMDGADMS  300
SMMQQHEQVA TPPNCTQVST QNTEEVTYQS SNVDQVDLE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-18194190MEF2 CHIMERA
6bz1_B8e-18194190MEF2 CHIMERA
6bz1_C8e-18194190MEF2 CHIMERA
6bz1_D8e-18194190MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269101.11e-149PREDICTED: agamous-like MADS-box protein AGL104
SwissprotQ9LM463e-94AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A2G5DWZ50.0A0A2G5DWZ5_AQUCA; Uncharacterized protein
STRINGAquca_014_00554.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-87AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]