PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe6G031900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 211aa MW: 24362 Da PI: 10.0713 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.7 | 2.6e-27 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvt+skRrngilKKA E+ +LC+ae+a++ifsstgk+ ey+s Aqcoe6G031900.1.p 9 KRIENSTNRQVTYSKRRNGILKKAREIHILCGAEIALVIFSSTGKMSEYIS 59 79***********************************************86 PP | |||||||
2 | K-box | 80.2 | 5.1e-27 | 73 | 167 | 1 | 95 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 yqk+sgk+l++ak+e+l+ el+++kke++n+q e+Rhl+Ged++sL+ keL +e++L+++l+k+R+kK+++++++ +++ e+e+++ Aqcoe6G031900.1.p 73 YQKTSGKKLWDAKHEYLSSELDRIKKENDNMQIELRHLKGEDINSLNAKELIPIEEALQNGLSKVRDKKSDIWRMMRKNTGLLEEENKRLSY 164 899************************************************************************99999999999988877 PP K-box 93 aLr 95 L+ Aqcoe6G031900.1.p 165 HLH 167 776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.852 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.9E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.06E-35 | 2 | 98 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.04E-39 | 2 | 82 | No hit | No description |
PRINTS | PR00404 | 1.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.9E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 2.5E-18 | 84 | 165 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.091 | 86 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010093 | Biological Process | specification of floral organ identity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MGRGKIEIKR IENSTNRQVT YSKRRNGILK KAREIHILCG AEIALVIFSS TGKMSEYISP 60 PGPTTLIKIL DKYQKTSGKK LWDAKHEYLS SELDRIKKEN DNMQIELRHL KGEDINSLNA 120 KELIPIEEAL QNGLSKVRDK KSDIWRMMRK NTGLLEEENK RLSYHLHSLE IGGNDREMEN 180 GYHQKGRDYP AQMPFTFRVQ PIQPNLQESK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 2e-17 | 1 | 68 | 1 | 68 | MEF2C |
5f28_B | 2e-17 | 1 | 68 | 1 | 68 | MEF2C |
5f28_C | 2e-17 | 1 | 68 | 1 | 68 | MEF2C |
5f28_D | 2e-17 | 1 | 68 | 1 | 68 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00080 | ChIP-seq | Transfer from AT5G20240 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF489475 | 0.0 | EF489475.1 Aquilegia vulgaris MADS transcription factor PI (PI) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020679600.1 | 1e-108 | MADS-box transcription factor 2 isoform X1 | ||||
Refseq | XP_020679601.1 | 1e-108 | MADS-box transcription factor 2 isoform X2 | ||||
Swissprot | Q0HA25 | 5e-99 | MADS9_VITVI; Agamous-like MADS-box protein MADS9 | ||||
TrEMBL | A0A2G5DVM5 | 1e-153 | A0A2G5DVM5_AQUCA; Uncharacterized protein | ||||
TrEMBL | A4UU40 | 1e-153 | A4UU40_AQUVU; MADS transcription factor PI | ||||
STRING | XP_010269077.1 | 1e-106 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 8e-79 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe6G031900.1.p |
Publications ? help Back to Top | |||
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