PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G031100.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 356aa    MW: 39476.9 Da    PI: 9.6214
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G031100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.11.5e-134771896
                       --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
                 B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96
                       l+k+f++++g+k   + t++l+ ++g+  +v l  +++++ ++++ GW  Fv +n L+e+D +vF+++++ s+f   + +
  Aqcoe6G031100.1.p  4 LSKNFVSKFGSK--LPETVVLKVLTGKATNVGL--TRTKEDIFFEHGWALFVVENSLEENDLLVFTFNEStSCF--DLLL 77
                       889***999977..7889***************..*******************************99877888..5445 PP
2B352.49.4e-17238323186
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f++v++p +v ++  ++lp++f++++ ++   s t +l+   s+++W vk+i  +++++++ +++GW++Fv +n+L++gD ++F+ld+
  Aqcoe6G031100.1.p 238 FIQVMKPYHVYTRFFVTLPRTFVKHNFSQ-VLS-TAVLRVvGSSKTWIVKIIGmQGSGCQVGIGGGWRDFVMDNNLEAGDACLFELDN 323
                        8899*******************888555.465.5566654799*******877999999*************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.984181IPR003340B3 DNA binding domain
SMARTSM010190.074181IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.4E-14383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.3E-14383IPR015300DNA-binding pseudobarrel domain
CDDcd100172.87E-11479No hitNo description
PfamPF023621.7E-10475IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.0E-18231339IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-17233325IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-18236339No hitNo description
PROSITE profilePS5086313.084238341IPR003340B3 DNA binding domain
PfamPF023621.9E-14238323IPR003340B3 DNA binding domain
SMARTSM010192.8E-15238341IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQALSKNFVS KFGSKLPETV VLKVLTGKAT NVGLTRTKED IFFEHGWALF VVENSLEEND  60
LLVFTFNEST SCFDLLLFDK TACGKEVVVS IEGSVDSGIR SLQIDKDCTD DVLSGSSSSN  120
SIESSGNTND SSWNNSVSSS SLVKGHKRGT KKNRKNANDD NQQTSKFRGK AQSSRLPCSR  180
TKERVSLVET KSKENYAGTS RKLAYYHYFQ SERRRVTPIE EIMALRKAEA VRSSRPNFIQ  240
VMKPYHVYTR FFVTLPRTFV KHNFSQVLST AVLRVVGSSK TWIVKIIGMQ GSGCQVGIGG  300
GWRDFVMDNN LEAGDACLFE LDNIKPSYNM AALDVSIFRV VDKIVPLKII VADSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DW990.0A0A2G5DW99_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_014_00300.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein