PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G004600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Whirly
Protein Properties Length: 227aa    MW: 25584.4 Da    PI: 10.0724
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G004600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly163.36.8e-51511862139
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrka 93 
                        v+k+kaal+v + +p+f++    + k +++G +ll++ +a++erkydW+k+q  als+tev++l++l + +sceffhdp++k+sn+G+vrk+
  Aqcoe6G004600.1.p  51 VFKGKAALSVYPLLPKFNES-ETSSKYDKKGCILLKFWPAIGERKYDWQKRQMIALSPTEVGSLISLEPGKSCEFFHDPSMKSSNAGQVRKS 141
                        9*****************99.567899***************************************************************** PP

             Whirly  94 lkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                        l+v Pl +  G+++nl+v n+++k ne+f vPv+kae++v+r++++
  Aqcoe6G004600.1.p 142 LSVTPLGE-DGYMFNLNVVNNILKINERFAVPVTKAEYTVMRTAFS 186
                        *****965.49********************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.8E-6737206IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.65E-5942226IPR009044ssDNA-binding transcriptional regulator
PfamPF085369.9E-5351183IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006281Biological ProcessDNA repair
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMKLSYFVRS RSAVSEKVAG KVSNTSNALW THCFTTQAGT RSNQIFADYT VFKGKAALSV  60
YPLLPKFNES ETSSKYDKKG CILLKFWPAI GERKYDWQKR QMIALSPTEV GSLISLEPGK  120
SCEFFHDPSM KSSNAGQVRK SLSVTPLGED GYMFNLNVVN NILKINERFA VPVTKAEYTV  180
MRTAFSFILP HIMGWNQITQ QVSASSDQNP MRQQEMRLSP ALEWNR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A1e-71372013169StWhy2
3n1i_A1e-71372013169protein StWhy2
3n1j_A1e-71372013169Protein StWhy2
3n1k_A1e-71372013169protein StWhy2
3n1l_A1e-71372013169protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020107565.14e-84single-stranded DNA-bindig protein WHY2, mitochondrial isoform X1
SwissprotD9J0345e-74WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2G5DUG01e-169A0A2G5DUG0_AQUCA; Uncharacterized protein
STRINGAquca_014_00047.11e-170(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-66WHIRLY 2