PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe6G001800.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 552aa    MW: 64656.9 Da    PI: 9.1287
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe6G001800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR149.31.6e-1546139190
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                        ++Y++Y+ + GFsv +++s+k+  r + +t+  +vCs  g+ ++  ++   ++k+r ++++ r +C+a++k++++  + +w+v+k+ ++HnH
  Aqcoe6G001800.1.p  46 EYYEKYGVSKGFSVLRRSSQKTwVRCDVVTTILYVCSHFGSYDKPVSEsvpKQKQRPNTSTMRGECQAQMKINLNPnTLEWVVMKV-NDHNH 136
                        69************99999999888889************9999988867666666677778899**********97778888886.68*** PP

               FAR1  88 ela 90 
                        +++
  Aqcoe6G001800.1.p 137 SFV 139
                        986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1246139IPR004330FAR1 DNA binding domain
PfamPF105511.4E-31232325IPR018289MULE transposase domain
PROSITE profilePS509669.483511547IPR007527Zinc finger, SWIM-type
PfamPF044341.5E-4517546IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-4522549IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 552 aa     Download sequence    Send to blast
MEEESFASEH GKSTNVEFGS PSKNVNDIMV TPYVGMTFKT SEDAKEYYEK YGVSKGFSVL  60
RRSSQKTWVR CDVVTTILYV CSHFGSYDKP VSESVPKQKQ RPNTSTMRGE CQAQMKINLN  120
PNTLEWVVMK VNDHNHSFVS PSKKMLLKTN RKMPEAAKNM VEMFRKENLP VNKVKSIFGG  180
DNIGFNNRAC WNHLRENPQF YYAIQCDGER RAVNFFWVDA RSRMSYQQFG DVVTFDTTYK  240
KNKYKLPFAP FTGVNHHFQT IQFGCALLQD ETENSFIWLF ETWMNVMGGV ALVSLITDSD  300
LAMRAAIPKV FPNTCHRLCY WHIKRKFGEK LGHVYFKKSG FKKDMKKCLK KTFRVADFEK  360
TWGEVMIKYE LTNNAWLEGL YQDRLAWVHV YNRSTFFAGM SSTGRSEGIN AFFKDYINSK  420
TDLKEFVEKY EQALKRIEAK ERDEDYESEQ KYRLFIEKSY ILYHARNIYT RKIFEKFKTQ  480
WLSIDMYKSS VVSDDPNTHI VTYKRGDTDH WMVTLDQQTL KGTCECHPFE FIGIPCTHIL  540
KVFSKLDLDE IP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208966.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLM5WTQ70.0M5WTQ7_PRUPE; Uncharacterized protein
STRINGEMJ101650.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-114FAR1-related sequence 5