PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G452200.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | C2H2 | ||||||||
Protein Properties | Length: 152aa MW: 17384.8 Da PI: 6.104 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 92 | 115 | 3 | 23 |
ET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 Cp..dCgksFsrksnLkrHirt.H 23 C Cg+sF+ +++ ++H+++ H Aqcoe5G452200.1.p 92 CAieGCGTSFPAPESARQHLQSrH 115 77779***************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12066 | 4.3E-11 | 18 | 69 | IPR021933 | Protein of unknown function DUF3546 |
PROSITE pattern | PS00028 | 0 | 92 | 115 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MASDVERNPI RLGLMSYKQF IQEQEDDIQP AEAQLRFDTY VSSMYKSDYF RAHKDEGWLR 60 DKYHPVNLKT DLKVFDIKVL DSVVVKKWKS SCAIEGCGTS FPAPESARQH LQSRHPDLVL 120 KDSSDDVVNC YVKAYELFCC LVKDCGMSFV T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ax1_A | 2e-15 | 13 | 68 | 1 | 59 | Serrate RNA effector molecule |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G452200.1.p |