PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G437300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

TALE

Protein Properties

Length: 638aa MW: 71883.7 Da PI: 7.2847

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G437300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.1	6.9e-09	409	446	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Aqcoe5G437300.1.p 409 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 446 564459******************************88 PP
2	BELL	108.4	4.3e-35	273	341	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +lqk+ka+Lls+leeVd+rYkqy++q++ v+ssFeav+g g+a Y +lA+ka+SrhFr L+dai+ q+ Aqcoe5G437300.1.p 273 DLQKRKARLLSMLEEVDRRYKQYCNQMKSVVSSFEAVVGTGAASGYSALASKAMSRHFRTLRDAIVAQL 341 79****************************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	3.4E-56	206	339	IPR006563	POX domain
Pfam	PF07526	1.9E-44	212	338	IPR006563	POX domain
PROSITE profile	PS50071	12.098	387	450	IPR001356	Homeobox domain
SMART	SM00389	5.0E-9	390	454	IPR001356	Homeobox domain
CDD	cd00086	3.05E-11	390	451	No hit	No description
SuperFamily	SSF46689	2.74E-17	391	456	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-27	393	456	IPR009057	Homeodomain-like
Pfam	PF05920	8.5E-18	407	446	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0009506	Cellular Component	plasmodesma
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 638 aa Download sequence Send to blast
MAGQSRQQGE MGSFGTHFLN QIPNFESNPE LYNLTTGMEM LTTFPSKNRD SSSSNSAVMW 60 KNNSFFSKQH QGVVHGHGRL IPGSSSSSSS TLKNINQSTN HDFYTADQFK QPDFSVGFSG 120 ASENLSWVVD GSSMRSIDYS CDERPNSTQG LSLSLCSNEL RGQTSHQQQQ DGFFGRSISF 180 QNQTPAEEEH ILQDGFMGSK ATAGSSNQHF QLKNSVYFTP AQELLNEFCS LGAKLNDQKK 240 KKKPQKTNQW EEENGLGSSR NKQPSLNSLD LLDLQKRKAR LLSMLEEVDR RYKQYCNQMK 300 SVVSSFEAVV GTGAASGYSA LASKAMSRHF RTLRDAIVAQ LKATKKAMGE KDPIAPGTTK 360 GETPRLRLLD QTLRQQKAFQ QMNMMENHPW RPQRGLPDRS VSILRAWLFE HFLHPYPSDV 420 DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYLEET KEQDNFASLD RVTSLDENCR 480 PYENHSPNLN HQEDQKPTPN QLVRNDSESL SSIINNPEPK NGRHHNLHQQ QQQHRRQLGK 540 DPETFGVVDL DFSSYAASGV HQNFSNGVSL TLGLQQHGES GPMNLSFSPA SQHSLFFPRD 600 HMEDCEQVQY SFLDGGEGEN LPYRNLMSAQ LLHDYAG*

Sequence ? help Back to Top

Protein Sequence Length: 638 aa Download sequence Send to blast

MAGQSRQQGE MGSFGTHFLN QIPNFESNPE LYNLTTGMEM LTTFPSKNRD SSSSNSAVMW  60
KNNSFFSKQH QGVVHGHGRL IPGSSSSSSS TLKNINQSTN HDFYTADQFK QPDFSVGFSG  120
ASENLSWVVD GSSMRSIDYS CDERPNSTQG LSLSLCSNEL RGQTSHQQQQ DGFFGRSISF  180
QNQTPAEEEH ILQDGFMGSK ATAGSSNQHF QLKNSVYFTP AQELLNEFCS LGAKLNDQKK  240
KKKPQKTNQW EEENGLGSSR NKQPSLNSLD LLDLQKRKAR LLSMLEEVDR RYKQYCNQMK  300
SVVSSFEAVV GTGAASGYSA LASKAMSRHF RTLRDAIVAQ LKATKKAMGE KDPIAPGTTK  360
GETPRLRLLD QTLRQQKAFQ QMNMMENHPW RPQRGLPDRS VSILRAWLFE HFLHPYPSDV  420
DKHILARQTG LSRSQVSNWF INARVRLWKP MVEEMYLEET KEQDNFASLD RVTSLDENCR  480
PYENHSPNLN HQEDQKPTPN QLVRNDSESL SSIINNPEPK NGRHHNLHQQ QQQHRRQLGK  540
DPETFGVVDL DFSSYAASGV HQNFSNGVSL TLGLQQHGES GPMNLSFSPA SQHSLFFPRD  600
HMEDCEQVQY SFLDGGEGEN LPYRNLMSAQ LLHDYAG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-15	396	454	5	63	Homeobox protein Meis2
3k2a_B	2e-15	396	454	5	63	Homeobox protein Meis2
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269\|PubMed:12244239, ECO:0000269\|PubMed:17693535, ECO:0000269\|PubMed:22786869}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002279230.2	0.0	PREDICTED: homeobox protein BEL1 homolog
Swissprot	Q38897	1e-129	BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBL	A0A2G5CSL3	0.0	A0A2G5CSL3_AQUCA; Uncharacterized protein
STRING	Aquca_038_00103.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41410.1	1e-118	TALE family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G437300.1.p

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171]