PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G418000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

GRAS

Protein Properties

Length: 708aa MW: 77260.7 Da PI: 5.5975

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G418000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	317.8	2.3e-97	352	706	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 v++L+e+A++v++g+l aqa+Larl+++ sp g+p+qR+a+ f+eAL++ l++ ++ +++++++ +++++++a+k+f evsP+l+f Aqcoe5G418000.1.p 352 VDQLFEAAKFVETGNLVHAQAILARLNHQLSPVGKPLQRAAFLFKEALQHLLTN------NKESSKTSTPLDVVHKINAFKAFTEVSPLLNF 437 579************************************************9......556677777788**************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakr 185 +++t+NqaIlea+++ +++Hi+Dfdi+ G+QW++++q++ R +g p+l+iT+++s +s++ el+ +e+L++fA+elg+pfe+n++ + Aqcoe5G418000.1.p 438 TNFTCNQAILEALQSYDHIHIVDFDIGFGGQWASFMQEIRMRVGGIPELKITAIVSLSSHDLPELKLAQENLSQFAKELGIPFEINFV---S 526 ***********************************************************************************9...5 PP GRAS 186 ledleleeL....rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273 l++++l +L +v +gEalaVn+ + + + l+s + +L+lvk+lsPk+vv v++ + ++ +F ++++l+++s+l++s+++ Aqcoe5G418000.1.p 527 LDAFNLASLsvaiNVAKGEALAVNCPVGVPTSC-----LSS-LPLLLHLVKKLSPKIVVSVDRGCR-GDLPFSLNVVHSLQTHSMLLESIDV 611 55555555522226677******877776.....455.789***************97.59*****************99 PP GRAS 274 klpres.eerikvErellgreivn.vvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363 ++s + ++k+E+++l + i++ ++ c+ + ++ Wr+ +++aGF+p+++s+ a++qa+++l+k + g++ve++++sl+l+W+ Aqcoe5G418000.1.p 612 V--NDSpDIAQKIEKFYLLPTIEKkLIDCQCTP------SMPPWRSLFTSAGFSPITFSNIAETQAEYVLEKLQASGFHVEKSNASLMLCWQ 695 8..4555999********75277888777......89*********************************************** PP GRAS 364 drpLvsvSaWr 374 +++L svSaWr Aqcoe5G418000.1.p 696 RHELASVSAWR 706 ********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	43.157	325	686	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.8E-95	352	706	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 708 aa Download sequence Send to blast
MRRMPFNLQG QGEIEAAKEF SSSIATKKWK KEGSFVGTEP ISVLDTRSPS LSPPTSSSTL 60 SSSLTTSDSL GVVSVQQKWE WLSTQQKQTV ETLALGAQQA GYDCNNYGSE LQPIPPALQI 120 FNGAEKCEFG LEFYDNMLSE SGAFIGQEQS LLGLIVGEGQ DLTSGFKQLL QSGGLEVQNT 180 YGFGMVDSGF GFEALGSGGG GGGDDDDGGF SPAMTAMNLG NSLSSLAVPF SGVSLNNNGK 240 INTTINPSSL PNCKVPSFGS INNLHPSVFY QEQQQQNQQF EMVDMKPQAI NFTQNQAMFA 300 APSSQTQHYQ HLVLPIKQEF CPSSLPDRPT MRTKRKGREE VLQQQHQQQV PVDQLFEAAK 360 FVETGNLVHA QAILARLNHQ LSPVGKPLQR AAFLFKEALQ HLLTNNKESS KTSTPLDVVH 420 KINAFKAFTE VSPLLNFTNF TCNQAILEAL QSYDHIHIVD FDIGFGGQWA SFMQEIRMRV 480 GGIPELKITA IVSLSSHDLP ELKLAQENLS QFAKELGIPF EINFVSLDAF NLASLSVAIN 540 VAKGEALAVN CPVGVPTSCL SSLPLLLHLV KKLSPKIVVS VDRGCRGDLP FSLNVVHSLQ 600 THSMLLESID VVNDSPDIAQ KIEKFYLLPT IEKKLIDCQC TPSMPPWRSL FTSAGFSPIT 660 FSNIAETQAE YVLEKLQASG FHVEKSNASL MLCWQRHELA SVSAWRC*

Sequence ? help Back to Top

Protein Sequence Length: 708 aa Download sequence Send to blast

MRRMPFNLQG QGEIEAAKEF SSSIATKKWK KEGSFVGTEP ISVLDTRSPS LSPPTSSSTL  60
SSSLTTSDSL GVVSVQQKWE WLSTQQKQTV ETLALGAQQA GYDCNNYGSE LQPIPPALQI  120
FNGAEKCEFG LEFYDNMLSE SGAFIGQEQS LLGLIVGEGQ DLTSGFKQLL QSGGLEVQNT  180
YGFGMVDSGF GFEALGSGGG GGGDDDDGGF SPAMTAMNLG NSLSSLAVPF SGVSLNNNGK  240
INTTINPSSL PNCKVPSFGS INNLHPSVFY QEQQQQNQQF EMVDMKPQAI NFTQNQAMFA  300
APSSQTQHYQ HLVLPIKQEF CPSSLPDRPT MRTKRKGREE VLQQQHQQQV PVDQLFEAAK  360
FVETGNLVHA QAILARLNHQ LSPVGKPLQR AAFLFKEALQ HLLTNNKESS KTSTPLDVVH  420
KINAFKAFTE VSPLLNFTNF TCNQAILEAL QSYDHIHIVD FDIGFGGQWA SFMQEIRMRV  480
GGIPELKITA IVSLSSHDLP ELKLAQENLS QFAKELGIPF EINFVSLDAF NLASLSVAIN  540
VAKGEALAVN CPVGVPTSCL SSLPLLLHLV KKLSPKIVVS VDRGCRGDLP FSLNVVHSLQ  600
THSMLLESID VVNDSPDIAQ KIEKFYLLPT IEKKLIDCQC TPSMPPWRSL FTSAGFSPIT  660
FSNIAETQAE YVLEKLQASG FHVEKSNASL MLCWQRHELA SVSAWRC*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	5e-33	338	705	3	378	Protein SCARECROW
5b3h_A	5e-33	338	705	3	377	Protein SCARECROW
5b3h_D	5e-33	338	705	3	377	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010258971.1	0.0	PREDICTED: scarecrow-like protein 6
Swissprot	O81316	1e-104	SCL6_ARATH; Scarecrow-like protein 6
TrEMBL	A0A2G5CWT9	0.0	A0A2G5CWT9_AQUCA; Uncharacterized protein
STRING	Aquca_035_00214.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	3e-95	GRAS family protein

Link Out ? help Back to Top
Phytozome	Aqcoe5G418000.1.p

Publications ? help Back to Top
Bari A,Orazova S,Ivashchenko A miR156- and miR171-binding sites in the protein-coding sequences of several plant genes. Biomed Res Int, 2013. 2013: p. 307145 [PMID:23936788] Xue XY, et al. Interaction between two timing microRNAs controls trichome distribution in Arabidopsis. PLoS Genet., 2014. 10(4): p. e1004266 [PMID:24699192]