PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G417900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRAS
Protein Properties Length: 753aa    MW: 81141.3 Da    PI: 6.5836
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G417900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.88.6e-933897511374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPil 91 
                        lv+ L+++ e v++g+l  a+ +Larl+++ sp g+p+qR+a+ ++eAL+  l+  + ++++   p +++++ +++ +++a+k+fsevsP+l
  Aqcoe5G417900.1.p 389 LVDHLFKASELVETGNLVHARGILARLNHQLSPVGKPLQRAAFLYKEALQLLLLTnNNEGIS--PPQRNSTPLDVVLKINAYKTFSEVSPLL 478
                        5789************************************************9992334443..4556666678****************** PP

               GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlva 183
                        +f+++t+Nqa+lea+e+ + +Hi+Dfdi++G+QW++++q++  R +g +sl+iT+++sp+s++  el+ t+++L++fA+ l++pfe n++  
  Aqcoe5G417900.1.p 479 QFTNFTCNQALLEALESYNNIHIVDFDIGYGGQWASFMQEIRMRIGGIASLKITAFVSPSSHDPLELNLTRDNLSHFANDLRIPFELNLMSL 570
                        *****************************************************************************************855 PP

               GRAS 184 krledleleeL..rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                        ++++    ++L  +++++Ea+aVnl     + +     l s  + +L lvk+lsPk++v v++ +d+++ +F + f ++++ +s+l+dsl+a
  Aqcoe5G417900.1.p 571 DSFNPA-SWSLaiNISENEAVAVNLPAGGPSSH-----LLS-LPLLLGLVKQLSPKIIVSVDRGCDRSDLPFSNYFQHSVQSCSVLLDSLDA 655
                        555555.4555226777********99655554.....333.567*********************************************88 PP

               GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdr 365
                          + + e  +k+E+ +l + i+  ++  +++      ++  W++ +++aGF+pv++s+++++qa+++l++ +++g++ve+++ sl+l+W++ 
  Aqcoe5G417900.1.p 656 V-HVNPEVVQKIEKYFLLPTIERSIMGCQRS----ASKMPPWKSLFTSAGFSPVTFSNFTETQAEYVLKRLPVRGFHVEKRNVSLMLCWQRL 742
                        7.5677999************9999877776....6899***************************************************** PP

               GRAS 366 pLvsvSaWr 374
                        +L svSaWr
  Aqcoe5G417900.1.p 743 ELASVSAWR 751
                        ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.645363731IPR005202Transcription factor GRAS
PfamPF035143.0E-90389751IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0048768Biological Processroot hair cell tip growth
GO:0051301Biological Processcell division
Sequence ? help Back to Top
Protein Sequence    Length: 753 aa     Download sequence    Send to blast
MRGKPYNLQG EGVFEVSTTG ISQAGLDKWK KKKKETVVNC EPTSVLDPRR SPSSPTSTST  60
LSSSFAGSDS VGGVASVQQK WEWPHTQQQQ EENSALVAEH SGAGGGGGGN SRKGEWGSEL  120
QPIPTDLQVI NGGEKCVGGM DDWENVLSES SGASLGQEHS LLGWIMGEVE DPGLKQLLQS  180
GGGGGGGGGG AIDFHNGSGF GMVDPGFGFE ALGGGGGGGR GGASAAMTMN LGSFNPSLAV  240
PSSGFPSHNN NGRMSSMSNS SSLPNCKAPF FGSNNNNNNT HSHNSIVSPS PNNLSVPISL  300
PPSVLYQQQQ QQFEMGDVKP QAFSSAPNQG FFVPLSYAQQ DQHLLLPPQQ GLPHQLQFLP  360
NSHPSRPTMA TKPKVGEEVL HQQHQQQVLV DHLFKASELV ETGNLVHARG ILARLNHQLS  420
PVGKPLQRAA FLYKEALQLL LLTNNNEGIS PPQRNSTPLD VVLKINAYKT FSEVSPLLQF  480
TNFTCNQALL EALESYNNIH IVDFDIGYGG QWASFMQEIR MRIGGIASLK ITAFVSPSSH  540
DPLELNLTRD NLSHFANDLR IPFELNLMSL DSFNPASWSL AINISENEAV AVNLPAGGPS  600
SHLLSLPLLL GLVKQLSPKI IVSVDRGCDR SDLPFSNYFQ HSVQSCSVLL DSLDAVHVNP  660
EVVQKIEKYF LLPTIERSIM GCQRSASKMP PWKSLFTSAG FSPVTFSNFT ETQAEYVLKR  720
LPVRGFHVEK RNVSLMLCWQ RLELASVSAW RC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-3239575025378Protein SCARECROW
5b3h_A5e-3239575024377Protein SCARECROW
5b3h_D5e-3239575024377Protein SCARECROW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010258971.10.0PREDICTED: scarecrow-like protein 6
TrEMBLA0A2G5CWQ80.0A0A2G5CWQ8_AQUCA; Uncharacterized protein
STRINGAquca_035_00213.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-114GRAS family protein