PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G413500.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 358aa    MW: 39602.8 Da    PI: 6.7969
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G413500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.82.5e-15181226555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn+ Er+RRd+iN+++ +L++l+P++      K +Ka++L +++eY+k Lq
  Aqcoe5G413500.2.p 181 HNQSERKRRDKINQRMKTLQKLVPNS-----SKTDKASMLDEVIEYLKTLQ 226
                        9************************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.09E-18174237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.574176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-18181234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.93E-16181230No hitNo description
PfamPF000106.1E-13181226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-17182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0009506Cellular Componentplasmodesma
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MSQCVPNWDL DENSTSIRVP FHPNSNMNDA KASDVTDPTL DYEVAELTWE NGQLGLHGLG  60
PPRVIGGKPI SSKYTWEKPR ASGTLESIVN QAVHRNQSVS VSETFGRESR QVGADSCEMD  120
LDTGFTSTSL DSDTNLNTID DRDSVSHTRP QKQARTEEDN KSTQNDKSTI STKRSRAAAI  180
HNQSERKRRD KINQRMKTLQ KLVPNSSKTD KASMLDEVIE YLKTLQAQVH MMSRMSMPQM  240
MMPMTMQQQL QMTMMAQMGM AGMGMGMGMG GMMDHMNSIG RPNIPGMPHQ VLNPAAFMSM  300
APWDGTNDRV PGSSALMPDP MASFLAACQT QPMTMDAYSR MGALYQQIHQ QVPNSKS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189ERKRRD
2185190RKRRDK
Functional Description ? help Back to Top
Source Description
UniProtRequired during the fertilization of ovules by pollen. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00034PBMTransfer from AT4G00050Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582839.11e-103transcription factor UNE10
SwissprotQ8GZ386e-83UNE10_ARATH; Transcription factor UNE10
TrEMBLA0A2G5CWJ00.0A0A2G5CWJ0_AQUCA; Uncharacterized protein
STRINGAquca_035_00175.11e-150(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.17e-79bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]