PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G412300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | SBP | ||||||||
Protein Properties | Length: 228aa MW: 25078.8 Da PI: 9.3404 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.8 | 9.8e-41 | 139 | 216 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l + k+yhrrhkvCe hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Aqcoe5G412300.4.p 139 RCQVEGCHVALVNSKDYHRRHKVCELHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSN 216 6**************************************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-34 | 137 | 201 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.197 | 137 | 214 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.83E-38 | 138 | 219 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 6.1E-32 | 140 | 213 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MENSGSGQNG NNGIFSWGFR DIGTQNRYDW NINNHNTLMF NGNNNNNAQS FYAGTSHVHP 60 DPHLTCLKLG KRHYFEDGSG GIVDGPILGD RHVDGFFPIE KRGRSYGFVG GGVGVGVGGG 120 PSSSSSSSVI IGTALPVPRC QVEGCHVALV NSKDYHRRHK VCELHSKAPK VVVLGIEQRF 180 CQQCSRFHVV SEFDDSKRSC RRRLAGHNER RRKSSNESMS RNHPQDQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 3e-30 | 140 | 213 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010264332.1 | 7e-86 | PREDICTED: squamosa promoter-binding-like protein 7 | ||||
TrEMBL | A0A2G5CWH0 | 1e-165 | A0A2G5CWH0_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_035_00165.1 | 1e-151 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27370.4 | 4e-37 | squamosa promoter binding protein-like 10 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G412300.4.p |