PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G412300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 190aa    MW: 20767.2 Da    PI: 9.6234
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G412300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP130.46.6e-41101178178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC++ l + k+yhrrhkvCe hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Aqcoe5G412300.3.p 101 RCQVEGCHVALVNSKDYHRRHKVCELHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSN 178
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.3E-3499163IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.19799176IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.24E-38100181IPR004333Transcription factor, SBP-box
PfamPF031104.1E-32102175IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MFNGNNNNNA QSFYAGTSHV HPDPHLTCLK LGKRHYFEDG SGGIVDGPIL GDRHVDGFFP  60
IEKRGRSYGF VGGGVGVGVG GGPSSSSSSS VIIGTALPVP RCQVEGCHVA LVNSKDYHRR  120
HKVCELHSKA PKVVVLGIEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSNES  180
MSRNHPQDQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-301021751184squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264332.18e-81PREDICTED: squamosa promoter-binding-like protein 7
TrEMBLA0A2G5CWH61e-135A0A2G5CWH6_AQUCA; Uncharacterized protein (Fragment)
STRINGAquca_035_00165.11e-135(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.41e-37squamosa promoter binding protein-like 10