PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe5G412300.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

SBP

Protein Properties

Length: 334aa MW: 36706 Da PI: 8.5937

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe5G412300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	101	178	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++ l + k+yhrrhkvCe hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++ Aqcoe5G412300.2.p 101 RCQVEGCHVALVNSKDYHRRHKVCELHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSN 178 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51141	32.197	99	176	IPR004333	Transcription factor, SBP-box
Gene3D	G3DSA:4.10.1100.10	3.7E-34	99	163	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.05E-38	100	181	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.3E-31	102	175	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MFNGNNNNNA QSFYAGTSHV HPDPHLTCLK LGKRHYFEDG SGGIVDGPIL GDRHVDGFFP 60 IEKRGRSYGF VGGGVGVGVG GGPSSSSSSS VIIGTALPVP RCQVEGCHVA LVNSKDYHRR 120 HKVCELHSKA PKVVVLGIEQ RFCQQCSRFH VVSEFDDSKR SCRRRLAGHN ERRRKSSNES 180 MSRNHPQEHR SMRLPYITSS TGRALSLLSS KTTSWVSPSD LSSRSSAALR ELIAENRAAV 240 LARQLFLDQG WHHHAMDDLG SNQGVSLAHI PHQHQVFPDS SEWERFQEAG GQVTLDLMQE 300 PGSAFGFLSG RTKSKDEEEC SQIWKSLEGT HVV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	2e-29	102	175	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010264332.1	1e-140	PREDICTED: squamosa promoter-binding-like protein 7
Swissprot	Q01JD1	2e-59	SPL7_ORYSI; Squamosa promoter-binding-like protein 7
Swissprot	Q7XT42	2e-59	SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBL	A0A2G5CWH6	0.0	A0A2G5CWH6_AQUCA; Uncharacterized protein (Fragment)
STRING	Aquca_035_00165.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27370.4	9e-37	squamosa promoter binding protein-like 10

Link Out ? help Back to Top
Phytozome	Aqcoe5G412300.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]