PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G412300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family SBP
Protein Properties Length: 372aa    MW: 41017.5 Da    PI: 8.4268
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G412300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.52.5e-40139216178
                        --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                        +CqvegC++ l + k+yhrrhkvCe hskap+v+v g+eqrfCqqCsrfh +sefD++krsCrrrLa+hnerrrk+++
  Aqcoe5G412300.1.p 139 RCQVEGCHVALVNSKDYHRRHKVCELHSKAPKVVVLGIEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSN 216
                        6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5114132.197137214IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.104.4E-34137201IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.84E-38138219IPR004333Transcription factor, SBP-box
PfamPF031101.5E-31140213IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MENSGSGQNG NNGIFSWGFR DIGTQNRYDW NINNHNTLMF NGNNNNNAQS FYAGTSHVHP  60
DPHLTCLKLG KRHYFEDGSG GIVDGPILGD RHVDGFFPIE KRGRSYGFVG GGVGVGVGGG  120
PSSSSSSSVI IGTALPVPRC QVEGCHVALV NSKDYHRRHK VCELHSKAPK VVVLGIEQRF  180
CQQCSRFHVV SEFDDSKRSC RRRLAGHNER RRKSSNESMS RNHPQEHRSM RLPYITSSTG  240
RALSLLSSKT TSWVSPSDLS SRSSAALREL IAENRAAVLA RQLFLDQGWH HHAMDDLGSN  300
QGVSLAHIPH QHQVFPDSSE WERFQEAGGQ VTLDLMQEPG SAFGFLSGRT KSKDEEECSQ  360
IWKSLEGTHV V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291402131184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264332.11e-145PREDICTED: squamosa promoter-binding-like protein 7
SwissprotQ7XT423e-59SPL7_ORYSJ; Squamosa promoter-binding-like protein 7
TrEMBLA0A2G5CWH00.0A0A2G5CWH0_AQUCA; Uncharacterized protein
STRINGAquca_035_00165.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27370.42e-36squamosa promoter binding protein-like 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]