PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G389300.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 370aa MW: 40746.3 Da PI: 8.3205 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.1 | 1.2e-18 | 198 | 232 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C nC+tt Tp+WR gpdg+ktLCnaCG++ +kk++ Aqcoe5G389300.4.p 198 CLNCKTTRTPQWRDGPDGPKTLCNACGIRLKKKRM 232 99******************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 5.23E-14 | 190 | 232 | No hit | No description |
SMART | SM00401 | 5.8E-16 | 192 | 242 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 3.2E-16 | 196 | 232 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.65E-14 | 197 | 235 | No hit | No description |
Pfam | PF00320 | 5.6E-16 | 198 | 231 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.387 | 198 | 228 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 14.571 | 289 | 369 | IPR027353 | NET domain |
Pfam | PF17035 | 1.9E-16 | 298 | 360 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MPELSGSSVP HGEPQVGPSS FAYHFHEIKE LFSQKEDLFP PASKNSVLFP KTSATVNDDD 60 IHLKSEQVVG PSVSRTLFLN GVGDGFPDIK KGKLQTCLKQ SVTVFSQEVD EMLESVLEMC 120 KIKKHLINKE LLANDPSSAA GVIQSSPSKK QKLSSSPSSS GDTTHVGTKG SQSRDRASSF 180 GDIGSSEESQ SRGLTKICLN CKTTRTPQWR DGPDGPKTLC NACGIRLKKK RMSPLGANEA 240 NKKLKQEDDD DLRIILESSG SLAKEAVKKY SDEMFGKLGD MEQQLEKCLD VIMSKCRKMA 300 HPEKQQLRKL IQNLPPKNLD RVVDIIVKHR KSSEGPCSEI HINLENEDNG TLWRLYYYVE 360 AVARASNLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248715.1 | 1e-105 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
Refseq | XP_010248716.1 | 1e-105 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
Refseq | XP_010248717.1 | 1e-105 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
TrEMBL | A0A2G5E719 | 0.0 | A0A2G5E719_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_011_00414.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08000.2 | 5e-16 | GATA transcription factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G389300.4.p |