PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe5G389300.3.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 371aa    MW: 40892.4 Da    PI: 8.32
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe5G389300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.11.2e-18199233135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C nC+tt Tp+WR gpdg+ktLCnaCG++ +kk++
  Aqcoe5G389300.3.p 199 CLNCKTTRTPQWRDGPDGPKTLCNACGIRLKKKRM 233
                        99******************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577165.23E-14191233No hitNo description
SMARTSM004015.8E-16193243IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.103.2E-16197233IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.64E-14198236No hitNo description
PROSITE profilePS5011412.387199229IPR000679Zinc finger, GATA-type
PfamPF003205.7E-16199232IPR000679Zinc finger, GATA-type
PROSITE profilePS5152514.571290370IPR027353NET domain
PfamPF170351.9E-16299361IPR027353NET domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDKELSGSSV PHGEPQVGPS SFAYHFHEIK ELFSQKEDLF PPASKNSVLF PKTSATVNDD  60
DIHLKSEQVV GPSVSRTLFL NGVGDGFPDI KKGKLQTCLK QSVTVFSQEV DEMLESVLEM  120
CKIKKHLINK ELLANDPSSA AGVIQSSPSK KQKLSSSPSS SGDTTHVGTK GSQSRDRASS  180
FGDIGSSEES QSRGLTKICL NCKTTRTPQW RDGPDGPKTL CNACGIRLKK KRMSPLGANE  240
ANKKLKQEDD DDLRIILESS GSLAKEAVKK YSDEMFGKLG DMEQQLEKCL DVIMSKCRKM  300
AHPEKQQLRK LIQNLPPKNL DRVVDIIVKH RKSSEGPCSE IHINLENEDN GTLWRLYYYV  360
EAVARASNLS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010248715.11e-105PREDICTED: uncharacterized protein LOC104591545 isoform X1
RefseqXP_010248716.11e-105PREDICTED: uncharacterized protein LOC104591545 isoform X1
RefseqXP_010248717.11e-105PREDICTED: uncharacterized protein LOC104591545 isoform X1
TrEMBLA0A2G5E7210.0A0A2G5E721_AQUCA; Uncharacterized protein
STRINGAquca_011_00414.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08000.25e-16GATA transcription factor 10