PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aqcoe5G389300.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
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Family | GATA | ||||||||
Protein Properties | Length: 259aa MW: 28646.7 Da PI: 9.2683 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 58.8 | 7.1e-19 | 87 | 121 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C nC+tt Tp+WR gpdg+ktLCnaCG++ +kk++ Aqcoe5G389300.2.p 87 CLNCKTTRTPQWRDGPDGPKTLCNACGIRLKKKRM 121 99******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 3.04E-14 | 79 | 121 | No hit | No description |
SMART | SM00401 | 5.8E-16 | 81 | 131 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-16 | 85 | 121 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.35E-14 | 86 | 124 | No hit | No description |
Pfam | PF00320 | 2.6E-16 | 87 | 120 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.387 | 87 | 117 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS51525 | 14.571 | 178 | 258 | IPR027353 | NET domain |
Pfam | PF17035 | 1.1E-16 | 187 | 249 | IPR027353 | NET domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 259 aa Download sequence Send to blast |
MLESVLEMCK IKKHLINKEL LANDPSSAAG VIQSSPSKKQ KLSSSPSSSG DTTHVGTKGS 60 QSRDRASSFG DIGSSEESQS RGLTKICLNC KTTRTPQWRD GPDGPKTLCN ACGIRLKKKR 120 MSPLGANEAN KKLKQEDDDD LRIILESSGS LAKEAVKKYS DEMFGKLGDM EQQLEKCLDV 180 IMSKCRKMAH PEKQQLRKLI QNLPPKNLDR VVDIIVKHRK SSEGPCSEIH INLENEDNGT 240 LWRLYYYVEA VARASNLS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010248715.1 | 3e-78 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
Refseq | XP_010248716.1 | 3e-78 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
Refseq | XP_010248717.1 | 3e-78 | PREDICTED: uncharacterized protein LOC104591545 isoform X1 | ||||
TrEMBL | A0A2G5E719 | 0.0 | A0A2G5E719_AQUCA; Uncharacterized protein | ||||
TrEMBL | A0A2G5E7J7 | 0.0 | A0A2G5E7J7_AQUCA; Uncharacterized protein | ||||
STRING | Aquca_011_00414.1 | 0.0 | (Aquilegia coerulea) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08000.2 | 1e-16 | GATA transcription factor 10 |
Link Out ? help Back to Top | |
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Phytozome | Aqcoe5G389300.2.p |